Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2716577..2716720 | Replicon | chromosome |
| Accession | NZ_CP045486 | ||
| Organism | Enterobacter cloacae strain 99101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2716582..2716685 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2716577..2716720 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEA59_RS12930 | 2712852..2714294 | + | 1443 | WP_203464853.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GEA59_RS12935 | 2714400..2714639 | + | 240 | WP_006176013.1 | DUF1480 family protein | - |
| GEA59_RS12940 | 2714674..2715318 | - | 645 | WP_203464854.1 | protein-serine/threonine phosphatase | - |
| GEA59_RS12945 | 2715478..2716458 | + | 981 | WP_203464855.1 | VirK/YbjX family protein | - |
| - | 2716577..2716720 | + | 144 | - | - | Antitoxin |
| - | 2716582..2716685 | - | 104 | - | - | Toxin |
| GEA59_RS12950 | 2716823..2717161 | - | 339 | WP_063868473.1 | YebY family protein | - |
| GEA59_RS12955 | 2717178..2718047 | - | 870 | WP_203464856.1 | copper homeostasis membrane protein CopD | - |
| GEA59_RS12960 | 2718049..2718420 | - | 372 | WP_107535597.1 | CopC domain-containing protein YobA | - |
| GEA59_RS12965 | 2718558..2718788 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GEA59_RS12970 | 2718900..2719550 | + | 651 | WP_203464857.1 | carbon-nitrogen hydrolase family protein | - |
| GEA59_RS12975 | 2719575..2720237 | + | 663 | WP_063450101.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141952 NZ_CP045486:c2716685-2716582 [Enterobacter cloacae]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT141952 NZ_CP045486:2716577-2716720 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGT
