Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2634705..2634848 | Replicon | chromosome |
| Accession | NZ_CP045485 | ||
| Organism | Enterobacter cloacae strain 88701 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2634710..2634813 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2634705..2634848 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEA56_RS12505 | 2630980..2632422 | + | 1443 | WP_203463449.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GEA56_RS12510 | 2632528..2632767 | + | 240 | WP_006176013.1 | DUF1480 family protein | - |
| GEA56_RS12515 | 2632802..2633446 | - | 645 | WP_102750894.1 | protein-serine/threonine phosphatase | - |
| GEA56_RS12520 | 2633606..2634586 | + | 981 | WP_063449635.1 | VirK/YbjX family protein | - |
| - | 2634705..2634848 | + | 144 | - | - | Antitoxin |
| - | 2634710..2634813 | - | 104 | - | - | Toxin |
| GEA56_RS12525 | 2634952..2635290 | - | 339 | WP_063450098.1 | YebY family protein | - |
| GEA56_RS12530 | 2635307..2636176 | - | 870 | WP_203463450.1 | copper homeostasis membrane protein CopD | - |
| GEA56_RS12535 | 2636178..2636549 | - | 372 | WP_203464650.1 | CopC domain-containing protein YobA | - |
| GEA56_RS12540 | 2636687..2636917 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GEA56_RS12545 | 2637029..2637679 | + | 651 | WP_063450100.1 | carbon-nitrogen hydrolase family protein | - |
| GEA56_RS12550 | 2637704..2638366 | + | 663 | WP_063450101.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141935 NZ_CP045485:c2634813-2634710 [Enterobacter cloacae]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT141935 NZ_CP045485:2634705-2634848 [Enterobacter cloacae]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGT
