Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1980767..1981038 | Replicon | chromosome |
| Accession | NZ_CP045457 | ||
| Organism | Escherichia coli strain ET12567 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1980805..1980908 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1980767..1981038 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECET_RS09765 | 1977924..1979363 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECET_RS09770 | 1979481..1979717 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ECET_RS09775 | 1979822..1980013 | + | 192 | WP_000457842.1 | YebW family protein | - |
| ECET_RS09780 | 1980014..1980670 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1980767..1981038 | + | 272 | - | - | Antitoxin |
| - | 1980805..1980908 | - | 104 | - | - | Toxin |
| ECET_RS09785 | 1981066..1981407 | - | 342 | WP_000976476.1 | YebY family protein | - |
| ECET_RS09790 | 1981420..1982292 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| ECET_RS09795 | 1982296..1982670 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ECET_RS09800 | 1982809..1983039 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECET_RS09805 | 1983141..1983797 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| ECET_RS09810 | 1983821..1984483 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141865 NZ_CP045457:c1980908-1980805 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT141865 NZ_CP045457:1980767-1981038 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
