Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2689982..2690191 | Replicon | chromosome |
| Accession | NZ_CP045451 | ||
| Organism | Enterobacter hormaechei strain 14320055602 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2689995..2690098 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2689982..2690191 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEA57_RS12665 | 2686250..2687698 | + | 1449 | WP_195207010.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GEA57_RS12670 | 2687805..2688044 | + | 240 | WP_003859885.1 | YebV family protein | - |
| GEA57_RS12675 | 2688079..2688723 | - | 645 | WP_045330032.1 | protein-serine/threonine phosphatase | - |
| GEA57_RS12680 | 2688891..2689871 | + | 981 | WP_045330035.1 | VirK/YbjX family protein | - |
| GEA57_RS12685 | 2689917..2690114 | + | 198 | WP_064489407.1 | hypothetical protein | - |
| - | 2689982..2690191 | + | 210 | - | - | Antitoxin |
| - | 2689995..2690098 | - | 104 | - | - | Toxin |
| GEA57_RS12690 | 2690239..2690577 | - | 339 | WP_003859787.1 | YebY family protein | - |
| GEA57_RS12695 | 2690594..2691463 | - | 870 | WP_064489408.1 | copper homeostasis membrane protein CopD | - |
| GEA57_RS12700 | 2691465..2691836 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| GEA57_RS12705 | 2691974..2692204 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GEA57_RS12710 | 2692316..2692966 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| GEA57_RS12715 | 2692991..2693653 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141838 NZ_CP045451:c2690098-2689995 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT141838 NZ_CP045451:2689982-2690191 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
