Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2716100..2716309 | Replicon | chromosome |
| Accession | NZ_CP045450 | ||
| Organism | Enterobacter hormaechei strain 14280161202 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2716113..2716216 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2716100..2716309 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GEA58_RS12825 | 2712368..2713816 | + | 1449 | WP_203452935.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GEA58_RS12830 | 2713923..2714162 | + | 240 | WP_003859885.1 | YebV family protein | - |
| GEA58_RS12835 | 2714197..2714841 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| GEA58_RS12840 | 2715009..2715989 | + | 981 | WP_203452936.1 | VirK/YbjX family protein | - |
| GEA58_RS12845 | 2716035..2716232 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2716100..2716309 | + | 210 | - | - | Antitoxin |
| - | 2716113..2716216 | - | 104 | - | - | Toxin |
| GEA58_RS12850 | 2716357..2716695 | - | 339 | WP_003859787.1 | YebY family protein | - |
| GEA58_RS12855 | 2716712..2717581 | - | 870 | WP_203452937.1 | copper homeostasis membrane protein CopD | - |
| GEA58_RS12860 | 2717583..2717954 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| GEA58_RS12865 | 2718092..2718322 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GEA58_RS12870 | 2718434..2719084 | + | 651 | WP_203452938.1 | carbon-nitrogen hydrolase family protein | - |
| GEA58_RS12875 | 2719108..2719770 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141820 NZ_CP045450:c2716216-2716113 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT141820 NZ_CP045450:2716100-2716309 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
