Detailed information of TA system TA141782

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/ParE-YafN
• Location: 2086088..2086616
• Replicon: chromosome
• Accession: NZ_CP045427
• Organism: Shewanella sp. YLB-09

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: FS418_RS08755
• Protein ID: WP_142872614.1
• Coordinates: 2086088..2086378 (-)
• Length: 97 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: FS418_RS08760
• Protein ID: WP_142872615.1
• Coordinates: 2086368..2086616 (-)
• Length: 83 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FS418_RS08735	2081659..2083635	+	1977	WP_142872610.1	BCCT family transporter	-
FS418_RS08740	2084304..2084540	+	237	WP_142872611.1	hypothetical protein	-
FS418_RS08745	2084765..2085463	+	699	WP_142872612.1	hypothetical protein	-
FS418_RS08750	2085482..2085964	+	483	WP_142872613.1	GNAT family N-acetyltransferase	-
FS418_RS08755	2086088..2086378	-	291	WP_142872614.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
FS418_RS08760	2086368..2086616	-	249	WP_142872615.1	type II toxin-antitoxin system Phd/YefM family antitoxin	Antitoxin
FS418_RS08765	2086693..2086799	-	107	Protein_1701	IS110 family transposase	-
FS418_RS08770	2087401..2087751	+	351	WP_142872616.1	YajD family HNH nuclease	-
FS418_RS08775	2087834..2088073	-	240	WP_142872617.1	DUF1289 domain-containing protein	-
FS418_RS08780	2088383..2089549	+	1167	WP_142872618.1	chemotaxis protein	-
FS418_RS08785	2089788..2091032	+	1245	WP_142872968.1	methyltransferase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (5-84)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 97 a.a.
• Molecular weight: 11228.18 Da
• Isoelectric Point: 10.6309

>T141782 WP_142872614.1 NZ_CP045427:c2086378-2086088 [Shewanella sp. YLB-09]
MTYNLEFKKSALKEWKKLGSTLQQQFKKKLSERLDNPHVPAAKLLGGDNMYKIKLRQSGYRLVYKVQDNIVIVTVLAVGK
RERNDVYQKAMKRLDD

Nucleotide

• Length: 291 bp

>T141782 NZ_CP060086:3713556-3714134 [Pseudomonas aeruginosa]
ATGTCCCTCGAACTGCTGAGCAACCGCCTCGAATTCCTCCGCGAAGCCGAACGCCTGAAAGACGTCCTGCGCTCCGCGCA
CACCTCCTCCGGCCGCCCGGAAAGCACCGCCGAACATAGCTGGCGGCTTTGCCTGATGGCACTGGCCTTCGAGGACCAAC
TGGCCGGCCTGGACCTCGGCAAGGTTCTGCGCATGTGCGTGGTCCACGACCTCGGCGAAGCGATCCACGGCGACATCCCC
GCCGTCGAGCAAGCGGCGCACCCGGACAAGGGCGAACAGGAACGCGCCGACCTGTTGCAGCTGACCCGTCATCTGGACAC
GCCGCTGCGCGATCGCCTGCTCGCCCTGTGGGACGAATACGAGCGCGGCGAGACCGCCGAAGCCCTGGCAGTGAAAGCGC
TGGACAAGCTGGAAACCCTGCTCCAGCACACCCAGGGCGACAATCCGGCGGACTTCGACTATGCCTTCAACCTCGACTAC
GGCCGTCGCTATACCGACCGCGCACCGCTGTTCAAGACCCTGCGCGAGTTACTCGACGCCAGGACCCGACAGCGCCTCGC
AGCTCGGCGCGACGCCTAG

Antitoxin

Protein

• Length: 83 a.a.
• Molecular weight: 9070.36 Da
• Isoelectric Point: 4.0206

>AT141782 WP_142872615.1 NZ_CP045427:c2086616-2086368 [Shewanella sp. YLB-09]
MTSRILADVAASITEFKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDKLEDLELLTIAKEREGEESISVNLN
DL

Nucleotide

• Length: 249 bp

>AT141782 NZ_CP060086:3712913-3713467 [Pseudomonas aeruginosa]
ATGACCGAGCCTCTCCCTTCTTCGTCCCTGGGCCCCGCCCTGCGTCGCTGGCGCCTGCTGCACCGGGTCAAGCAAACGCA
TGCCGCCGAATTGCTCGGCGTGGCGCAATCGACCATCTCGCGCTGGGAGTCCGGTACCCAGGCGCTGCTGGTGGAGGAAC
GGGCACGCCTGGAGCGTCTGCTCGGCGCCCGCCTGGAAAGCGCCGCCGACCAGGCACTGGCCCGCCTGGTCGAGGCCAAC
CCGCAACCCGTGCACCTGATCTGCGACCTCACCCATCGCTTGCTGGCCTGTTCGCCGGCACGCGCCGCGCAATTCGGCGT
GCCCCTCGGCGAACTGCTCGACCGTTCGCTGTGGCCCTATTGCAGCGAGGAAATCCTCCGCCAGGAAGCCACCCTCGAGG
AACTCGGCTGGCGCGAACTGCTGGCACCGCCGGCGCTGGAGTTCGCCAGCGGAGCGAACGCCTCGGCCATCGTGCCGATC
CGGCGCAGCCGTTGCCGCTGGACCCGCATGACCCTCTCGGACGGACGCGCGGTGCGCCTGGTGGAAACCCTCTGA