Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2715983..2716184 | Replicon | chromosome |
| Accession | NZ_CP045312 | ||
| Organism | Enterobacter hormaechei strain 14102KSN | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2715988..2716091 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2715983..2716184 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GC132_RS12860 | 2712245..2713693 | + | 1449 | WP_202195747.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GC132_RS12865 | 2713798..2714037 | + | 240 | WP_006811010.1 | YebV family protein | - |
| GC132_RS12870 | 2714072..2714716 | - | 645 | WP_038416258.1 | protein-serine/threonine phosphatase | - |
| GC132_RS12875 | 2714884..2715864 | + | 981 | WP_038416259.1 | VirK/YbjX family protein | - |
| GC132_RS12880 | 2715910..2716107 | + | 198 | WP_071881497.1 | hypothetical protein | - |
| - | 2715983..2716184 | + | 202 | - | - | Antitoxin |
| - | 2715988..2716091 | - | 104 | - | - | Toxin |
| GC132_RS12885 | 2716233..2716571 | - | 339 | WP_022648464.1 | YebY family protein | - |
| GC132_RS12890 | 2716588..2717457 | - | 870 | WP_038416260.1 | copper homeostasis membrane protein CopD | - |
| GC132_RS12895 | 2717459..2717830 | - | 372 | WP_038416261.1 | CopC domain-containing protein YobA | - |
| GC132_RS12900 | 2717968..2718198 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| GC132_RS12905 | 2718310..2718948 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| GC132_RS12910 | 2718973..2719635 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2706875..2792093 | 85218 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141699 NZ_CP045312:c2716091-2715988 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT141699 NZ_CP045312:2715983-2716184 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGGCGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
