Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 97644..97811 | Replicon | chromosome |
| Accession | NZ_CP045300 | ||
| Organism | Kosakonia arachidis strain KACC 18508 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 97704..97806 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 97644..97811 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCU50_RS00850 | 92844..94904 | + | 2061 | WP_090123682.1 | oligopeptidase B | - |
| GCU50_RS00855 | 94901..95563 | - | 663 | WP_090123684.1 | exodeoxyribonuclease X | - |
| GCU50_RS00860 | 95575..95805 | - | 231 | WP_090123686.1 | DNA polymerase III subunit theta | - |
| GCU50_RS00865 | 95943..96317 | + | 375 | WP_090123687.1 | CopC domain-containing protein YobA | - |
| GCU50_RS00870 | 96321..97190 | + | 870 | WP_090123688.1 | copper homeostasis membrane protein CopD | - |
| GCU50_RS00875 | 97209..97547 | + | 339 | WP_090123690.1 | YebY family protein | - |
| - | 97644..97811 | - | 168 | - | - | Antitoxin |
| - | 97704..97806 | + | 103 | - | - | Toxin |
| GCU50_RS00880 | 98033..98563 | + | 531 | WP_090123691.1 | outer membrane lipoprotein Blc | - |
| GCU50_RS00885 | 98681..99469 | - | 789 | WP_090123693.1 | MipA/OmpV family protein | - |
| GCU50_RS00890 | 99594..100289 | + | 696 | WP_090123694.1 | response regulator | - |
| GCU50_RS00895 | 100286..101464 | + | 1179 | WP_090123696.1 | two-component sensor histidine kinase | - |
| GCU50_RS00900 | 101558..102712 | + | 1155 | WP_090123698.1 | efflux RND transporter periplasmic adaptor subunit | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T141654 NZ_CP045300:97704-97806 [Kosakonia arachidis]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT141654 NZ_CP045300:c97811-97644 [Kosakonia arachidis]
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGGCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGGCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
