Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2067662..2067807 | Replicon | chromosome |
| Accession | NZ_CP045263 | ||
| Organism | Klebsiella pneumoniae strain 16HN-263 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2067698..2067800 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2067662..2067807 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELO34_RS10380 | 2062792..2064852 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| ELO34_RS10385 | 2064856..2065515 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| ELO34_RS10390 | 2065594..2065824 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| ELO34_RS10395 | 2065937..2066311 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| ELO34_RS10400 | 2066315..2067184 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| ELO34_RS10405 | 2067201..2067539 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2067662..2067807 | - | 146 | - | - | Antitoxin |
| - | 2067698..2067800 | + | 103 | - | - | Toxin |
| ELO34_RS10410 | 2068175..2068318 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| ELO34_RS10415 | 2068423..2069391 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| ELO34_RS10420 | 2069548..2070201 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| ELO34_RS10425 | 2070198..2070389 | - | 192 | WP_002911395.1 | YebW family protein | - |
| ELO34_RS10430 | 2070487..2070726 | - | 240 | WP_002911393.1 | YebV family protein | - |
| ELO34_RS10435 | 2070842..2072275 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T141584 NZ_CP045263:2067698-2067800 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT141584 NZ_CP045263:c2067807-2067662 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
