Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | /RES-TIGR02293 |
Location | 3918923..3919827 | Replicon | chromosome |
Accession | NZ_CP045216 | ||
Organism | Pantoea dispersa strain BJQ0007 |
Toxin (Protein)
Gene name | - | Uniprot ID | - |
Locus tag | GAY20_RS18585 | Protein ID | WP_152391420.1 |
Coordinates | 3919363..3919827 (+) | Length | 155 a.a. |
Antitoxin (Protein)
Gene name | - | Uniprot ID | A0A246NMT1 |
Locus tag | GAY20_RS18580 | Protein ID | WP_058757556.1 |
Coordinates | 3918923..3919366 (+) | Length | 148 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
GAY20_RS18560 | 3915034..3915429 | + | 396 | WP_031279757.1 | transposase | - |
GAY20_RS18565 | 3916339..3917292 | - | 954 | WP_152391419.1 | DMT family transporter | - |
GAY20_RS18570 | 3917365..3918195 | - | 831 | WP_058757554.1 | AraC family transcriptional regulator | - |
GAY20_RS18575 | 3918322..3918849 | + | 528 | WP_059009915.1 | isochorismatase family protein | - |
GAY20_RS18580 | 3918923..3919366 | + | 444 | WP_058757556.1 | DUF2384 domain-containing protein | Antitoxin |
GAY20_RS18585 | 3919363..3919827 | + | 465 | WP_152391420.1 | RES domain-containing protein | Toxin |
GAY20_RS18590 | 3920357..3920911 | + | 555 | WP_152391421.1 | hypothetical protein | - |
GAY20_RS18595 | 3920973..3921515 | - | 543 | WP_021507842.1 | single-stranded DNA-binding protein SSB1 | - |
GAY20_RS18600 | 3921737..3924565 | + | 2829 | WP_021507843.1 | excinuclease ABC subunit UvrA | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 155 a.a. Molecular weight: 17137.65 Da Isoelectric Point: 6.3296
>T141517 WP_152391420.1 NZ_CP045216:3919363-3919827 [Pantoea dispersa]
VIFYRLTKSQYAAEAWSGYGAKQYGGRWNHKGYPTVYVATSVSLAALEVLVHIGRESVLDEYTLFSIDIPDAEVAYLAEA
FLPPDWRHDPAPLSTMDLGTGWLQSAEGAALMLPSTIIPMENKAILNPLHHSFKSALTRVKELPFVFDQRLIKG
VIFYRLTKSQYAAEAWSGYGAKQYGGRWNHKGYPTVYVATSVSLAALEVLVHIGRESVLDEYTLFSIDIPDAEVAYLAEA
FLPPDWRHDPAPLSTMDLGTGWLQSAEGAALMLPSTIIPMENKAILNPLHHSFKSALTRVKELPFVFDQRLIKG
Download Length: 465 bp
>T141517 NZ_CP059996:8811-9107 [Sulfurospirillum sp. ACSDCE]
ATGTATACTCCTGAGTATCATCGTTTCTTTAAAAAAGATATAGAACGTGATAAAAAAAGTGGTCAGTTTTCAGCAGAGGA
TTTCACACTTTTAAAAGAGGTAATGTCCGCGATGTTGAATGATGAGATTCTTCATGAAAAGTATAAAAACCACCCCTTAA
AAGGGGAATGGGAAGGAACTTATGAATGTCACATTAAAAATGATTGGCTTTTAATTTATCAGATAGATAACAATACAAAT
GAAATGATATTTATGAGACTTGGTGCACACGCTCAAATATTTAAAAAATATAAATAA
ATGTATACTCCTGAGTATCATCGTTTCTTTAAAAAAGATATAGAACGTGATAAAAAAAGTGGTCAGTTTTCAGCAGAGGA
TTTCACACTTTTAAAAGAGGTAATGTCCGCGATGTTGAATGATGAGATTCTTCATGAAAAGTATAAAAACCACCCCTTAA
AAGGGGAATGGGAAGGAACTTATGAATGTCACATTAAAAATGATTGGCTTTTAATTTATCAGATAGATAACAATACAAAT
GAAATGATATTTATGAGACTTGGTGCACACGCTCAAATATTTAAAAAATATAAATAA
Antitoxin
Download Length: 148 a.a. Molecular weight: 16114.59 Da Isoelectric Point: 9.9132
>AT141517 WP_058757556.1 NZ_CP045216:3918923-3919366 [Pantoea dispersa]
MRAYIPQPGANDNALWRVAGLPPRGIELTRMLEAGLPVAVIDDIRHWSAMTRAEIMKVTGINERNIARRKSTGKSLSPDE
SERVARFVRVMDAAVQLFAGNKEEATQWLSRPVKGLGNVAPITLLTTESGALDVLDLIGRLEHGVFS
MRAYIPQPGANDNALWRVAGLPPRGIELTRMLEAGLPVAVIDDIRHWSAMTRAEIMKVTGINERNIARRKSTGKSLSPDE
SERVARFVRVMDAAVQLFAGNKEEATQWLSRPVKGLGNVAPITLLTTESGALDVLDLIGRLEHGVFS
Download Length: 444 bp
>AT141517 NZ_CP059996:8554-8811 [Sulfurospirillum sp. ACSDCE]
ATGACCGGAACAGCTATGACAGTACGCATTGATCCTGATATCAAAAATAAAGCAGCAGAATATCTCAAGCAAATGGGATT
AACTACCAGCGAAGCTACACGACTTTTTTTACATAGTGTTGTACTTCACAAAGGTCTTCCTTTTGAGCTTCGCATTCCTA
ATGAAAAAACAGTGACAGCAATCAAAGAAACAAAAGAGGGCAAGAATATTATTAAACATACTTCCCCTAAAGAATTGTTT
GATGATTTAGGATTGTAA
ATGACCGGAACAGCTATGACAGTACGCATTGATCCTGATATCAAAAATAAAGCAGCAGAATATCTCAAGCAAATGGGATT
AACTACCAGCGAAGCTACACGACTTTTTTTACATAGTGTTGTACTTCACAAAGGTCTTCCTTTTGAGCTTCGCATTCCTA
ATGAAAAAACAGTGACAGCAATCAAAGAAACAAAAGAGGGCAAGAATATTATTAAACATACTTCCCCTAAAGAATTGTTT
GATGATTTAGGATTGTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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