Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2890081..2890352 | Replicon | chromosome |
| Accession | NZ_CP045213 | ||
| Organism | Escherichia coli strain EH41 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2890119..2890222 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2890081..2890352 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GC231_RS14215 | 2887238..2888677 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GC231_RS14220 | 2888795..2889031 | + | 237 | WP_001295499.1 | YebV family protein | - |
| GC231_RS14225 | 2889136..2889327 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GC231_RS14230 | 2889328..2889984 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2890081..2890352 | + | 272 | - | - | Antitoxin |
| - | 2890119..2890222 | - | 104 | - | - | Toxin |
| GC231_RS14235 | 2890380..2890721 | - | 342 | WP_000976492.1 | YebY family protein | - |
| GC231_RS14240 | 2890734..2891606 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GC231_RS14245 | 2891610..2891984 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GC231_RS14250 | 2892123..2892353 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GC231_RS14255 | 2892455..2893111 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| GC231_RS14260 | 2893135..2893797 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141494 NZ_CP045213:c2890222-2890119 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT141494 NZ_CP045213:2890081-2890352 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
