Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2807514..2807785 | Replicon | chromosome |
| Accession | NZ_CP045209 | ||
| Organism | Escherichia coli strain 4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2807552..2807655 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2807514..2807785 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GC226_RS13670 | 2804671..2806110 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GC226_RS13675 | 2806228..2806464 | + | 237 | WP_001295499.1 | YebV family protein | - |
| GC226_RS13680 | 2806569..2806760 | + | 192 | WP_001296140.1 | YebW family protein | - |
| GC226_RS13685 | 2806761..2807417 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2807514..2807785 | + | 272 | - | - | Antitoxin |
| - | 2807552..2807655 | - | 104 | - | - | Toxin |
| GC226_RS13690 | 2807813..2808154 | - | 342 | WP_000976492.1 | YebY family protein | - |
| GC226_RS13695 | 2808167..2809039 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| GC226_RS13700 | 2809043..2809417 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| GC226_RS13705 | 2809556..2809786 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| GC226_RS13710 | 2809888..2810544 | + | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| GC226_RS13715 | 2810568..2811230 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141464 NZ_CP045209:c2807655-2807552 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT141464 NZ_CP045209:2807514-2807785 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
