Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2416806..2416900 | Replicon | chromosome |
| Accession | NZ_CP045149 | ||
| Organism | Yersinia pestis strain SCPM-O-DNA-18 (I-3113) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2416807..2416900 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2416806..2416900 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCK70_RS11565 | 2411999..2414077 | - | 2079 | WP_002211100.1 | flagellar biosynthesis protein FlhA | - |
| GCK70_RS11570 | 2414077..2415237 | - | 1161 | WP_002211099.1 | flagellar type III secretion system protein FlhB | - |
| GCK70_RS11575 | 2415769..2416227 | + | 459 | WP_002211098.1 | hypothetical protein | - |
| GCK70_RS11580 | 2416221..2416547 | + | 327 | WP_002211097.1 | DUF1493 family protein | - |
| - | 2416806..2416900 | + | 95 | - | - | Antitoxin |
| - | 2416807..2416900 | - | 94 | - | - | Toxin |
| GCK70_RS11590 | 2417070..2417411 | - | 342 | WP_002211095.1 | YebY family protein | - |
| GCK70_RS11595 | 2417508..2418392 | - | 885 | WP_002211094.1 | copper homeostasis membrane protein CopD | - |
| GCK70_RS11600 | 2418395..2418781 | - | 387 | WP_002211093.1 | CopC domain-containing protein YobA | - |
| GCK70_RS11605 | 2419178..2419687 | - | 510 | WP_002211092.1 | non-heme ferritin | - |
| GCK70_RS11610 | 2420088..2420318 | + | 231 | WP_002211091.1 | DNA polymerase III subunit theta | - |
| GCK70_RS11615 | 2420378..2421328 | - | 951 | WP_002211090.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T141303 NZ_CP045149:c2416900-2416807 [Yersinia pestis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 95 bp
>AT141303 NZ_CP045149:2416806-2416900 [Yersinia pestis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA
