Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 799933..800488 Replicon chromosome
Accession NZ_CP045118
Organism Pseudomonas sp. SCB32

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag GA645_RS03880 Protein ID WP_152220112.1
Coordinates 800204..800488 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag GA645_RS03875 Protein ID WP_152220110.1
Coordinates 799933..800211 (+) Length 93 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
GA645_RS03860 796115..797134 - 1020 WP_152220104.1 branched-chain amino acid aminotransferase -
GA645_RS03865 797518..798186 + 669 WP_152220106.1 TetR family transcriptional regulator -
GA645_RS03870 798183..799832 + 1650 WP_152220108.1 acyl-CoA dehydrogenase family protein -
GA645_RS03875 799933..800211 + 279 WP_152220110.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
GA645_RS03880 800204..800488 + 285 WP_152220112.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
GA645_RS03885 800657..801166 - 510 WP_152220114.1 Bro-N domain-containing protein -
GA645_RS03890 801689..803164 + 1476 WP_152220116.1 AMP nucleosidase -
GA645_RS03895 803300..804076 + 777 WP_152220118.1 deoxyribose-phosphate aldolase -
GA645_RS03900 804193..804756 + 564 WP_152220120.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-73)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11207.05 Da        Isoelectric Point: 10.5919

>T141241 WP_152220112.1 NZ_CP045118:800204-800488 [Pseudomonas sp. SCB32]
MPEFRLEFETSAQREWKKLDQDIRRQFTRKLAERLVHPRVQADKLHGMKDCYKIKLSSAGYRLVYRVEDDRVVVLVLAIG
KRERSAVYDAAKKR

Download         Length: 285 bp

>T141241 NZ_CP059901:2378352-2378780 [Mumia sp. ZJ1417]
GTGAGGGCGCTCCTCGACGTCAACGTGCTGCTCGCTCTGTTCGACCGCGACCACGCCGATCACGCCCGTGCCCGTGACTG
GCTGACGGCCGAGATCACACAGGGCTGGGCGTCCTGCCCGCTGACCCAGAACGGGTTCGTCCGCGTGGTCGGCCAGCCGC
AATACCCGAGCCCGGTCCCGGTCGCGCAGGCGATCCAGATGCTGGCCCGGGCGTGCAGCACCGAGCACCACGAGTTCTGG
CCCAGCGACCGCAGCCTGCTCGACGAGACGTTCGTCGACCCACGTCGGATCCACGGGCCGCGCCAGGTCACCGACCTCTA
CCTCCTCGCGACCGCGGTCGCACACCGCGGGAGGTTCGTGACGTTCGACCGCGCGATCCCGGTGTCCGCGGTGCCCGGCG
CGACGAACGACCACCTCGTCGTGCTCTGA

Antitoxin


Download         Length: 93 a.a.        Molecular weight: 9972.35 Da        Isoelectric Point: 4.1957

>AT141241 WP_152220110.1 NZ_CP045118:799933-800211 [Pseudomonas sp. SCB32]
MQNILANVAVSVSELKKNPSAVLSGADGEAVAVLNHNRVMGYMVPAERYEAMLDYIEDLELAKLARERIEAGVPAIKARI
EGDDIVFEDADA

Download         Length: 279 bp

>AT141241 NZ_CP059901:2378122-2378355 [Mumia sp. ZJ1417]
GTGCGCACCACTCTTGACATCGACGACGACGTGCTTCGCGCGGTCAAGGAGCGGGCGCGGCGCGAGGGACGCAGCGCCGG
CGCAGTCGTCTCAGACCTCGTCCGCGAGTCGCTCACCCGTTCGGTCGACATGAAGCCCGACGAGGGCTTCTTCGGCTTCT
CTCCCCTGCCGCACCGAGGCCCCGTCGTCTCCAACGCGCTGGTGGACGAGCTGCGCGAGGAGATCGGCGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References