Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 1264788..1265316 | Replicon | chromosome |
| Accession | NZ_CP045070 | ||
| Organism | Vibrio harveyi strain WXL538 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | F9277_RS06690 | Protein ID | WP_046268373.1 |
| Coordinates | 1264788..1265078 (-) | Length | 97 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | K5UYY9 |
| Locus tag | F9277_RS06695 | Protein ID | WP_004730320.1 |
| Coordinates | 1265068..1265316 (-) | Length | 83 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F9277_RS06645 | 1260259..1260558 | + | 300 | Protein_1218 | hypothetical protein | - |
| F9277_RS06650 | 1260555..1260677 | + | 123 | WP_152163260.1 | DUF3265 domain-containing protein | - |
| F9277_RS06655 | 1260747..1261256 | - | 510 | WP_045595538.1 | hypothetical protein | - |
| F9277_RS06660 | 1261243..1262070 | - | 828 | WP_193222944.1 | hypothetical protein | - |
| F9277_RS28560 | 1262136..1262414 | - | 279 | WP_193222945.1 | PAAR domain-containing protein | - |
| F9277_RS06665 | 1262523..1262615 | + | 93 | WP_079390552.1 | DUF3265 domain-containing protein | - |
| F9277_RS06670 | 1262652..1263386 | + | 735 | WP_152163261.1 | hypothetical protein | - |
| F9277_RS06675 | 1263413..1263505 | + | 93 | WP_079771035.1 | DUF3265 domain-containing protein | - |
| F9277_RS28565 | 1264369..1264509 | - | 141 | WP_193222973.1 | hypothetical protein | - |
| F9277_RS06690 | 1264788..1265078 | - | 291 | WP_046268373.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| F9277_RS06695 | 1265068..1265316 | - | 249 | WP_004730320.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| F9277_RS28570 | 1265391..1265459 | + | 69 | WP_074531725.1 | DUF3265 domain-containing protein | - |
| F9277_RS06700 | 1265512..1265982 | + | 471 | WP_152163263.1 | GNAT family N-acetyltransferase | - |
| F9277_RS06705 | 1266203..1266523 | + | 321 | WP_025523864.1 | DUF4160 domain-containing protein | - |
| F9277_RS06710 | 1266501..1266746 | + | 246 | WP_025523863.1 | DUF2442 domain-containing protein | - |
| F9277_RS06715 | 1266773..1266865 | + | 93 | WP_079386108.1 | DUF3265 domain-containing protein | - |
| F9277_RS06725 | 1267543..1267959 | + | 417 | Protein_1234 | hypothetical protein | - |
| F9277_RS06730 | 1267956..1268342 | + | 387 | WP_152163264.1 | hypothetical protein | - |
| F9277_RS06735 | 1268391..1268480 | + | 90 | WP_193222965.1 | DUF3265 domain-containing protein | - |
| F9277_RS06745 | 1268869..1269321 | - | 453 | WP_039977653.1 | hypothetical protein | - |
| F9277_RS06750 | 1269661..1269954 | + | 294 | WP_050940193.1 | hypothetical protein | - |
| F9277_RS06755 | 1270022..1270111 | + | 90 | WP_193222960.1 | DUF3265 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 1171053..1281181 | 110128 | |
| - | inside | Integron | - | - | 1169841..1274832 | 104991 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 a.a. Molecular weight: 11275.28 Da Isoelectric Point: 10.5932
>T141176 WP_046268373.1 NZ_CP045070:c1265078-1264788 [Vibrio harveyi]
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSEVYRKAMKRLDD
MTYKLDFKKSALKEWKKLGSTLQQQFKKKLIERLDNPHVPASKLSGADNMYKIKLRQSGYRLVYKVEDDVIIVTVLAVGK
RERSEVYRKAMKRLDD
Download Length: 291 bp
>T141176 NZ_CP059849:2404511-2404687 [Citrobacter freundii]
GTGAAGCAAAGTGAGTTTAGACGCTGGCTTGAATCTCAGGGAGTTGCTGTTACAAACGGCTCAAATCATCTGAAACTGAG
ATATCAGGGAAGGCGTAGCGTTATGCCCAGACATCCAGGTGATGAAATAAAAGAAGCCTTGCGAAAAGCGATTATTAAGC
AGCTTGACTTACAGTAA
GTGAAGCAAAGTGAGTTTAGACGCTGGCTTGAATCTCAGGGAGTTGCTGTTACAAACGGCTCAAATCATCTGAAACTGAG
ATATCAGGGAAGGCGTAGCGTTATGCCCAGACATCCAGGTGATGAAATAAAAGAAGCCTTGCGAAAAGCGATTATTAAGC
AGCTTGACTTACAGTAA
Antitoxin
Download Length: 83 a.a. Molecular weight: 9109.39 Da Isoelectric Point: 3.9610
>AT141176 WP_004730320.1 NZ_CP045070:c1265316-1265068 [Vibrio harveyi]
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLTIAKERESEESISVNID
DL
MTTRILADVAASITELKANPMKVATSAYGEPVAVLNRNEPAFYCVPAEAYEMMMDRLEDLELLTIAKERESEESISVNID
DL
Download Length: 249 bp
>AT141176 NZ_CP059849:2404734-2405150 [Citrobacter freundii]
ATGCGTTATCCTGTTACTCTAACACCGGCAGTGGAAGGTGGGTTTGTGGTTTCTTTCCCGGATATTCCGGAAGCATTAAC
TCAGGGAAATACTCGCCATGACGCTTTGCAGGCCGCGCAGGCGGCATTGATTACCGCTTTTGAATTCTATTTCGACGACA
ACGAGGCGATTCCACTCCCTTCAGCGGTTAGCGCTGAAGATGACTACGTAGAAATACCGCTGAGCGTTGCGTCTAAGGTT
CTTCTGCTGAATGCCTTCCTTGAATCAAAAATCACCCAGCAGGAGCTGGCGAACAGGATCGGCAGACCTAAGCAGGAGAT
CACCCGTTTATTTGATTTAAAGCACACGACAAAAATTGATGCCGTGCAGATTGCTGCGCGCGCCTTAGGCAAAGAGCTGG
CGTTAACGATGTTGTAA
ATGCGTTATCCTGTTACTCTAACACCGGCAGTGGAAGGTGGGTTTGTGGTTTCTTTCCCGGATATTCCGGAAGCATTAAC
TCAGGGAAATACTCGCCATGACGCTTTGCAGGCCGCGCAGGCGGCATTGATTACCGCTTTTGAATTCTATTTCGACGACA
ACGAGGCGATTCCACTCCCTTCAGCGGTTAGCGCTGAAGATGACTACGTAGAAATACCGCTGAGCGTTGCGTCTAAGGTT
CTTCTGCTGAATGCCTTCCTTGAATCAAAAATCACCCAGCAGGAGCTGGCGAACAGGATCGGCAGACCTAAGCAGGAGAT
CACCCGTTTATTTGATTTAAAGCACACGACAAAAATTGATGCCGTGCAGATTGCTGCGCGCGCCTTAGGCAAAGAGCTGG
CGTTAACGATGTTGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|