Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 832651..832794 | Replicon | chromosome |
| Accession | NZ_CP045064 | ||
| Organism | Enterobacter roggenkampii strain WCHER090065 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 832656..832759 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 832651..832794 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GIX98_RS04010 | 828917..830359 | + | 1443 | WP_046092768.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GIX98_RS04015 | 830466..830705 | + | 240 | WP_008500472.1 | YebV family protein | - |
| GIX98_RS04020 | 830740..831384 | - | 645 | WP_045372529.1 | protein-serine/threonine phosphatase | - |
| GIX98_RS04025 | 831551..832492 | + | 942 | WP_058653385.1 | VirK/YbjX family protein | - |
| - | 832651..832794 | + | 144 | - | - | Antitoxin |
| - | 832656..832759 | - | 104 | - | - | Toxin |
| GIX98_RS04030 | 832898..833236 | - | 339 | WP_008500468.1 | YebY family protein | - |
| GIX98_RS04035 | 833253..834122 | - | 870 | WP_126287158.1 | copper homeostasis membrane protein CopD | - |
| GIX98_RS04040 | 834124..834495 | - | 372 | WP_058653388.1 | CopC domain-containing protein YobA | - |
| GIX98_RS04045 | 834633..834863 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| GIX98_RS04050 | 834974..835624 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| GIX98_RS04055 | 835649..836311 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141159 NZ_CP045064:c832759-832656 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT141159 NZ_CP045064:832651-832794 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
