Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1836628..1836773 | Replicon | chromosome |
| Accession | NZ_CP045015 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain BK13048 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1836664..1836766 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1836628..1836773 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F9865_RS09090 | 1831758..1833818 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| F9865_RS09095 | 1833822..1834481 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| F9865_RS09100 | 1834560..1834790 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| F9865_RS09105 | 1834903..1835277 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| F9865_RS09110 | 1835281..1836150 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| F9865_RS09115 | 1836167..1836505 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1836628..1836773 | - | 146 | - | - | Antitoxin |
| - | 1836664..1836766 | + | 103 | - | - | Toxin |
| F9865_RS09125 | 1837142..1837285 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| F9865_RS09130 | 1837390..1838358 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| F9865_RS09135 | 1838515..1839168 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| F9865_RS09140 | 1839165..1839356 | - | 192 | WP_002911395.1 | YebW family protein | - |
| F9865_RS09145 | 1839454..1839693 | - | 240 | WP_002911393.1 | YebV family protein | - |
| F9865_RS09150 | 1839809..1841242 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T141105 NZ_CP045015:1836664-1836766 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT141105 NZ_CP045015:c1836773-1836628 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
