Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2174574..2174742 | Replicon | chromosome |
| Accession | NZ_CP044527 | ||
| Organism | Klebsiella grimontii strain SS141 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2174632..2174735 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2174574..2174742 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EHW69_RS10640 | 2169701..2171761 | + | 2061 | WP_049085565.1 | oligopeptidase B | - |
| EHW69_RS10645 | 2171768..2172427 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| EHW69_RS10650 | 2172506..2172736 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| EHW69_RS10655 | 2172872..2173246 | + | 375 | WP_049085566.1 | CopC domain-containing protein YobA | - |
| EHW69_RS10660 | 2173251..2174120 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| EHW69_RS10665 | 2174137..2174475 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2174574..2174742 | - | 169 | - | - | Antitoxin |
| - | 2174632..2174735 | + | 104 | - | - | Toxin |
| EHW69_RS10670 | 2174860..2175819 | - | 960 | WP_049085573.1 | spore coat U domain-containing protein | - |
| EHW69_RS10675 | 2175834..2178164 | - | 2331 | WP_082237025.1 | fimbrial biogenesis outer membrane usher protein | - |
| EHW69_RS10680 | 2178167..2178931 | - | 765 | WP_004134823.1 | molecular chaperone | - |
| EHW69_RS10685 | 2178950..2179468 | - | 519 | WP_032711055.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T141044 NZ_CP044527:2174632-2174735 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT141044 NZ_CP044527:c2174742-2174574 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
