Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 423894..424530 Replicon chromosome
Accession NZ_CP044483
Organism Acinetobacter schindleri strain HZE30-1

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag FSC11_RS02070 Protein ID WP_163164836.1
Coordinates 424144..424530 (+) Length 129 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag FSC11_RS02065 Protein ID WP_163167696.1
Coordinates 423894..424151 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FSC11_RS02045 419366..420373 + 1008 WP_004809777.1 DNA-directed RNA polymerase subunit alpha -
FSC11_RS02050 420392..420757 + 366 WP_004786886.1 50S ribosomal protein L17 -
FSC11_RS02055 420977..422482 + 1506 WP_163164834.1 NAD(P)/FAD-dependent oxidoreductase -
FSC11_RS02060 422545..423717 - 1173 WP_163164835.1 acyl-CoA dehydrogenase family protein -
FSC11_RS02065 423894..424151 + 258 WP_163167696.1 succinate dehydrogenase assembly factor 2 Antitoxin
FSC11_RS02070 424144..424530 + 387 WP_163164836.1 hypothetical protein Toxin
FSC11_RS02075 425066..426106 + 1041 WP_163164837.1 hypothetical protein -
FSC11_RS02080 426172..426744 + 573 WP_048881851.1 rhombosortase -
FSC11_RS02085 426921..429116 + 2196 WP_163164839.1 TRAP transporter large permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Flavinator of succinate dehydrogenase

(10-82)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 15535.54 Da        Isoelectric Point: 9.6431

>T141004 WP_163164836.1 NZ_CP044483:424144-424530 [Acinetobacter schindleri]
MDNRCYQLKRSLLALAFQFFIFIVLMFVMYQLLPLWLWGICLVAGLIIYHLFYRKRPQIAQFEYLDGREWTINHHDQRIQ
RAQISHVIDHQAYLVVYFQHAKVPPLLIWCDQLPTQQWKSLKVLTKMI

Download         Length: 387 bp

>T141004 NZ_CP059591:2058400-2058651 [Xanthomonas oryzae pv. oryzae]
ATGCTACGGCTGCGTGAATTCCTGAGGCCGAAGAATCCCGATGCCGCGAGGCGGGCCGGCGAAGCGATTAGGCGCGGCGT
CCAGGCTCTCGGTGCCCACCCTCGAATGGGGCGGCTCATAGAAGATCTGTCTGAACAGTATCGGGAGTGGCTTATCGATT
TTGGGGATAGCGGCTATGTGGCTCGGTACCGCTTCGATGGGGATACCGTCACGATTTTGGCCGTGCGACACCAGAAGGAA
GCGGGGTACTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 10244.66 Da        Isoelectric Point: 4.4898

>AT141004 WP_163167696.1 NZ_CP044483:423894-424151 [Acinetobacter schindleri]
MTEDISLEERKVIYRARRGLKELDVYFDPYVKNCYLTADSFEKEMFAELVAQEDPDLLDWFMEVSEPPRPELREFINKLK
HYVHG

Download         Length: 258 bp

>AT141004 NZ_CP059591:2058095-2058373 [Xanthomonas oryzae pv. oryzae]
ATGGTTACGGCAACTTCCATCAAGCTTGATGATGAATTGAAAGGGCGGGTTCAGCACTTGGCAGAGTCGCGCCGGCGTAC
CCCGCATTGGATCATGCGCGAAGCCATTGAGCAGTACGTCGAGCGCGAGGAAAAGCGCGAGGCGCTGAACCGGGACACGC
TCAAGGCATGGGATGAATTTCAGGCGACTGGCCTGCATGTGACCGCTGAGGAAGTGGACAAGTGGCTCGCGAGCTGGGGA
ACTGACGACGAACTGCCTCCGCCAGAATGCCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References