Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 2041170..2041806 Replicon chromosome
Accession NZ_CP044474
Organism Acinetobacter schindleri strain HZE33-1

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag FSC12_RS09745 Protein ID WP_048881826.1
Coordinates 2041420..2041806 (+) Length 129 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag FSC12_RS09740 Protein ID WP_163167696.1
Coordinates 2041170..2041427 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FSC12_RS09720 2036389..2036754 + 366 WP_004786886.1 50S ribosomal protein L17 -
FSC12_RS09725 2036974..2038479 + 1506 WP_163169153.1 NAD(P)/FAD-dependent oxidoreductase -
FSC12_RS09730 2038533..2039684 - 1152 WP_004646736.1 IS4 family transposase -
FSC12_RS09735 2039821..2040993 - 1173 WP_163169155.1 acyl-CoA dehydrogenase family protein -
FSC12_RS09740 2041170..2041427 + 258 WP_163167696.1 succinate dehydrogenase assembly factor 2 Antitoxin
FSC12_RS09745 2041420..2041806 + 387 WP_048881826.1 hypothetical protein Toxin
FSC12_RS09750 2042342..2043382 + 1041 WP_163169157.1 hypothetical protein -
FSC12_RS09755 2043448..2044020 + 573 WP_048881851.1 rhombosortase -
FSC12_RS09760 2044197..2046392 + 2196 WP_163169158.1 TRAP transporter large permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Flavinator of succinate dehydrogenase

(10-82)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 15522.54 Da        Isoelectric Point: 9.6431

>T141002 WP_048881826.1 NZ_CP044474:2041420-2041806 [Acinetobacter schindleri]
MDNRCYQLKRSLLALAFQFFIFIVLMFVMYQLLPLWLWGICLVAGLIIYHLFYRKRPQIAQFEYLDGREWTITHHDQRIQ
RAQISHVIDHQAYLVVYFQHAKVPPLLIWCDQLPTQQWKSLKVLTKMI

Download         Length: 387 bp

>T141002 NZ_CP059591:430218-430352 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGTGCAATTGTGCTGCTCGTGCTGTCCATGTTGTCGGTCGGTCTGCTGTCGGGCTGCAACACCGTCGCAGGTGC
CGGCAAGGACGTGAAGGGCGCCGGCGAGAAGGTGGAAGACGCAGCGCGTAAGTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 10244.66 Da        Isoelectric Point: 4.4898

>AT141002 WP_163167696.1 NZ_CP044474:2041170-2041427 [Acinetobacter schindleri]
MTEDISLEERKVIYRARRGLKELDVYFDPYVKNCYLTADSFEKEMFAELVAQEDPDLLDWFMEVSEPPRPELREFINKLK
HYVHG

Download         Length: 258 bp

>AT141002 NZ_CP059591:430002-430154 [Xanthomonas oryzae pv. oryzae]
ATGAAGCGACTGCTGACACTGATGGTGCTGGGCCTGTTTTCGGCCGGCGTGATGACGGGCTGCAACACCGTGGCTGGCGC
TGGCAAGGACTTGCAGGGCGCGGGTGGGAAGGTCGAGAAAACGGCCGAAAAATGCAGCGATGGTAAGTGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References