Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 467454..468078 Replicon chromosome
Accession NZ_CP044463
Organism Acinetobacter schindleri strain HZE23-1

Toxin (Protein)


Gene name cptA Uniprot ID -
Locus tag FSC10_RS02360 Protein ID WP_163170850.1
Coordinates 467692..468078 (+) Length 129 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID -
Locus tag FSC10_RS02355 Protein ID WP_171056625.1
Coordinates 467454..467699 (+) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FSC10_RS02335 462914..463921 + 1008 WP_004809777.1 DNA-directed RNA polymerase subunit alpha -
FSC10_RS02340 463940..464305 + 366 WP_004786886.1 50S ribosomal protein L17 -
FSC10_RS02345 464525..466030 + 1506 WP_163170849.1 NAD(P)/FAD-dependent oxidoreductase -
FSC10_RS02350 466093..467265 - 1173 WP_163169155.1 acyl-CoA dehydrogenase family protein -
FSC10_RS02355 467454..467699 + 246 WP_171056625.1 succinate dehydrogenase assembly factor 2 Antitoxin
FSC10_RS02360 467692..468078 + 387 WP_163170850.1 hypothetical protein Toxin
FSC10_RS02365 468614..469654 + 1041 WP_163170851.1 hypothetical protein -
FSC10_RS02370 469720..470292 + 573 WP_048881851.1 rhombosortase -
FSC10_RS02375 470469..472664 + 2196 WP_004809766.1 TRAP transporter large permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Flavinator of succinate dehydrogenase

(6-78)


Sequences

Toxin        


Download         Length: 129 a.a.        Molecular weight: 15481.49 Da        Isoelectric Point: 9.6431

>T141000 WP_163170850.1 NZ_CP044463:467692-468078 [Acinetobacter schindleri]
MDSRCYQLKRSLLALAFQFFIFIVLMFVMYQLLPLWLWGICLVAGLIIYHLFYRKRPQIAQFEYLDGREWTITHHDQRVQ
RAQISHVIDHQAYLVVYFQHAKVPPLLIWCDQLPTQQWKSLKVLTKMI

Download         Length: 387 bp

>T141000 NZ_CP059590:4680620-4680871 [Xanthomonas oryzae pv. oryzae]
ATGCTACGGCTGCGTGAATTCCTGAGGCCGAAGAATCCCGATGCCGCGAGGCGGGCCGGCGAAGCGATTAGGCGCGGCGT
CCAGGCTCTCGGTGCCCACCCTCGAATGGGGCGGCTCATAGAAGATCTGTCTGAACAGTATCGGGAGTGGCTTATCGATT
TTGGGGATAGCGGCTATGTGGCTCGGTACCGCTTCGATGGGGATACCGTCACGATTTTGGCCCTGCGACACCAGAAGGAA
GCGGGGTACTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9778.20 Da        Isoelectric Point: 4.7118

>AT141000 WP_171056625.1 NZ_CP044463:467454-467699 [Acinetobacter schindleri]
ISLEERKVIYRARRGLKELDVYFDPYVKNCYLTADPFEKEMFAELVAQEDPDLLDWFMEVSEPPRPELREFINKLKHYVH
G

Download         Length: 246 bp

>AT141000 NZ_CP059590:4680315-4680593 [Xanthomonas oryzae pv. oryzae]
ATGGTTACGGCAACTTCCATCAAGCTTGATGATGAATTGAAAGGGCGGGTTCAGCACTTGGCAGAGTCGCGCCGGCGTAC
CCCGCATTGGATCATGCGCGAAGCCATTGAGCAGTACGTCGAGCGCGAGGAAAAGCGCGAGGCGCTGAACCGGGACACGC
TCAAGGCATGGGATGAATTTCAGGCGACTGGCCTGCATGTGACCGCTGAGGAAGTGGACAAGTGGCTCGCGAGCTGGGGA
ACTGACGACGAACTGCCTCCGCCAGAATGCCACAAGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References