Detailed information of TA system TA140989

Bioinformatically predicted

Overview

TA module

• Type: IV
• Classification (family/domain): cptAB/-
• Location: 414198..414822
• Replicon: chromosome
• Accession: NZ_CP044450
• Organism: Acinetobacter indicus strain MMS9-2

Toxin (Protein)

• Gene name: cptA
• Uniprot ID: -
• Locus tag: FSC05_RS02030
• Protein ID: WP_163141121.1
• Coordinates: 414430..414822 (+)
• Length: 131 a.a.

Antitoxin (Protein)

• Gene name: cptB
• Uniprot ID: -
• Locus tag: FSC05_RS02025
• Protein ID: WP_171065118.1
• Coordinates: 414198..414443 (+)
• Length: 82 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FSC05_RS02005	409661..410668	+	1008	WP_005180245.1	DNA-directed RNA polymerase subunit alpha	-
FSC05_RS02010	410688..411053	+	366	WP_004754212.1	50S ribosomal protein L17	-
FSC05_RS02015	411252..412742	+	1491	WP_163141115.1	NAD(P)/FAD-dependent oxidoreductase	-
FSC05_RS02020	412830..414002	-	1173	WP_163141118.1	acyl-CoA dehydrogenase family protein	-
FSC05_RS02025	414198..414443	+	246	WP_171065118.1	succinate dehydrogenase assembly factor 2	Antitoxin
FSC05_RS02030	414430..414822	+	393	WP_163141121.1	hypothetical protein	Toxin
FSC05_RS02035	415339..416412	+	1074	WP_163141124.1	hypothetical protein	-
FSC05_RS02040	416468..417040	+	573	WP_163141127.1	rhombosortase	-
FSC05_RS02045	417221..419275	+	2055	Protein_396	TRAP transporter large permease subunit	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Flavinator of succinate dehydrogenase (6-78)

Sequences

Toxin

Protein

• Length: 131 a.a.
• Molecular weight: 14936.75 Da
• Isoelectric Point: 10.4540

>T140989 WP_163141121.1 NZ_CP044450:414430-414822 [Acinetobacter indicus]
MSMAKRDFQLKPSRLALLFQLSLLILFSVLSFQLLHPLLWLLGLLLAAVSYYGFQRRSQLTALAHLDGAEWSLQFNSGSK
IQRGLLEHILDHQLYLVLYFHHAPVKSAVIWRDQVPLAEWKALKTLAKTI

Nucleotide

• Length: 393 bp

>T140989 NZ_CP059589:c156065-155784 [Xanthomonas oryzae pv. oryzae]
TTGGAAGCGACTGCCGACGACATCGCAATTGACAACGTGCCCGCTGCAGCGGCGCTGGTGAAACGGGTGTTCGCGCACGT
TGAGCAGTTGATCGAACCCCCGGACAGTGGAAGCCGGCTACAGGAACTCAAGCGCTCGCGCTATCGCCAGATTGTCGAAC
CACCTTGCCGCGTGATCTACCGCTTGGATGGGCAGCGCATCGTGGTGGTGCACGTGTTGCGCTCGGAGCGCGCGCTTCGC
AAGCGCCGCATTTCACGCTGGAAGCGGCTAAGGAAGGTCTGA

Antitoxin

Protein

• Length: 82 a.a.
• Molecular weight: 9758.15 Da
• Isoelectric Point: 4.9108

>AT140989 WP_171065118.1 NZ_CP044450:414198-414443 [Acinetobacter indicus]
ISLEERKVIYRARRGLKEIDVYFDPYVKNYYLTADPEEKATFAALVEQEDPDLLDWFMEVSEPPRPEMRELIRKLKHYVH
G

Nucleotide

• Length: 246 bp

>AT140989 NZ_CP059589:c156349-156119 [Xanthomonas oryzae pv. oryzae]
ATGCGCACCGAACGTGTCACCACGCTCAAGGGTCAGGCGACCGAACTTCTTGCAGCTACAGAGCGCGACAAGGAGCCAAT
CCTGATCACACAGCACGGTTTACCCAGCGCCTATCTGGTGGATGTTGCCAGCTATGAGCGCATGCAGCAGCGCATGGCGA
TCCTCGAAGGAATCGCCCGTGGAGAAATGGCAGTAGCGCAAGGCCGCACGCTGACCCATGAACAGGCATAG