Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2628616..2628887 | Replicon | chromosome |
| Accession | NZ_CP044410 | ||
| Organism | Escherichia coli strain ecMN1F | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2628654..2628757 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2628616..2628887 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNW43_RS12800 | 2625774..2627212 | + | 1439 | Protein_2467 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FNW43_RS12805 | 2627330..2627566 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FNW43_RS12810 | 2627671..2627862 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FNW43_RS12815 | 2627863..2628519 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2628616..2628887 | + | 272 | - | - | Antitoxin |
| - | 2628654..2628757 | - | 104 | - | - | Toxin |
| FNW43_RS12820 | 2628915..2629256 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FNW43_RS12825 | 2629269..2630141 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FNW43_RS12830 | 2630145..2630519 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FNW43_RS12835 | 2630658..2630888 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FNW43_RS12840 | 2630990..2631646 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FNW43_RS12845 | 2631670..2632332 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140894 NZ_CP044410:c2628757-2628654 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140894 NZ_CP044410:2628616-2628887 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
