Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 514167..514762 Replicon chromosome
Accession NZ_CP044410
Organism Escherichia coli strain ecMN1F

Toxin (Protein)


Gene name chpB Uniprot ID U9XNP6
Locus tag FNW43_RS02405 Protein ID WP_000239577.1
Coordinates 514412..514762 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID U9Y2K1
Locus tag FNW43_RS02400 Protein ID WP_001223208.1
Coordinates 514167..514418 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FNW43_RS02390 509832..513611 + 3780 WP_000060911.1 autotransporter assembly complex protein TamB -
FNW43_RS02395 513614..513955 + 342 WP_001219160.1 gamma-glutamylcyclotransferase -
FNW43_RS02400 514167..514418 + 252 WP_001223208.1 type II toxin-antitoxin system antitoxin ChpS Antitoxin
FNW43_RS02405 514412..514762 + 351 WP_000239577.1 endoribonuclease toxin ChpB Toxin
FNW43_RS02410 514842..515372 - 531 WP_000055075.1 inorganic diphosphatase -
FNW43_RS02415 515682..516638 + 957 WP_000265913.1 galactofuranose ABC transporter substrate-binding protein YtfQ -
FNW43_RS02420 516778..518280 + 1503 WP_000205805.1 sugar ABC transporter ATP-binding protein -
FNW43_RS02425 518294..519316 + 1023 WP_001313531.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-114)

Antitoxin

SpoVT-AbrB domain

(6-49)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12492.40 Da        Isoelectric Point: 5.5572

>T140871 WP_000239577.1 NZ_CP044410:514412-514762 [Escherichia coli]
MVKKSEFERGDIVLVGFDPASGHEQQGAGRPALVLSVQAFNQLGMTLVAPITQGGNFARYAGFSVPLHCEEGDVHGVVLV
NQVRMMDLHARLAKRIGLAADEVVEEALLRLQAVVE

Download         Length: 351 bp

>T140871 NZ_CP059488:c1783837-1783541 [Acidithiobacillus ferrivorans]
ATGACCGAGCTCAAGCAAACAGAGACCTTCAGAAGGTGGTGGACGAAGCTCAAAGATGAACGAGCTCGCGGTATCGTTGC
CGGTCGTCTGGATCGCCTCGCTTATGGGTTGATCGGCGACGCGGAGCCAGTGGGAGAGGGTATAAGTGAGTTACGCATCC
ACTATGGCCCCGGGTACCGCGTTTATTTTCAGCAACGAGGGAGCATGATCATCGTCTTGCTCTGTGGTGGCAACAAGAAC
ACGCAAGCGAAGGACATCAAGGTGGCGAAGCGCCTGGCTGCTGAATGGAGAGAATGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9271.58 Da        Isoelectric Point: 4.4201

>AT140871 WP_001223208.1 NZ_CP044410:514167-514418 [Escherichia coli]
MRITIKRWGNSAGMVIPNIVMKELNLQPGQSVEAQVSNNQLILTPISRRYSLDELLAQCDMNAAELSEQDVWGKSTPAGD
EIW

Download         Length: 252 bp

>AT140871 NZ_CP059488:c1783538-1783242 [Acidithiobacillus ferrivorans]
ATGAGTGAAAAATTGTCTACCTTTGACCCTGCCGAAGGGCTGACATCAGACGCGGCCATCGCAGCCTTTATGGCCGATGC
GTTTGAATCTGCAGACGCCGGCTACATTGCGCACGCGCTGGGCGTCGTGGCCCGCGCCAAGGGAATGGCTCAGATCGCTG
GAGAAACTGGTCTTTCGCGTGAACAGTTGTACCGCTCATTCAGCGAGCGCGGCAATCCGACGCTCAAGACCACGCTCGCA
GTCATGAAGGTCCTGGGGATTGAACTTACGGCAAAACCGGGCCCACAGGGCCGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB U9XNP6

Antitoxin

Source ID Structure
AlphaFold DB A0A7U9LQ26

References