Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2934020..2934291 | Replicon | chromosome |
| Accession | NZ_CP044403 | ||
| Organism | Escherichia coli strain NMBU-W10C18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2934058..2934161 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2934020..2934291 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7O57_RS14475 | 2931177..2932616 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F7O57_RS14480 | 2932734..2932970 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F7O57_RS14485 | 2933075..2933266 | + | 192 | WP_001296140.1 | YebW family protein | - |
| F7O57_RS14490 | 2933267..2933923 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 2934020..2934291 | + | 272 | - | - | Antitoxin |
| - | 2934058..2934161 | - | 104 | - | - | Toxin |
| F7O57_RS14495 | 2934319..2934660 | - | 342 | WP_001520705.1 | YebY family protein | - |
| F7O57_RS14500 | 2934673..2935545 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| F7O57_RS14505 | 2935549..2935923 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| F7O57_RS14510 | 2936062..2936292 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F7O57_RS14515 | 2936394..2937050 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| F7O57_RS14520 | 2937074..2937736 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140845 NZ_CP044403:c2934161-2934058 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140845 NZ_CP044403:2934020-2934291 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
