Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1114945..1115154 | Replicon | chromosome |
| Accession | NZ_CP044335 | ||
| Organism | Enterobacter hormaechei strain AKB48 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1114958..1115061 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1114945..1115154 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D6T76_RS05265 | 1111220..1112662 | + | 1443 | WP_211483285.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D6T76_RS05270 | 1112769..1113008 | + | 240 | WP_169722364.1 | DUF1480 family protein | - |
| D6T76_RS05275 | 1113042..1113686 | - | 645 | WP_126495464.1 | protein-serine/threonine phosphatase | - |
| D6T76_RS05280 | 1113854..1114834 | + | 981 | WP_033486806.1 | VirK/YbjX family protein | - |
| D6T76_RS05285 | 1114880..1115077 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 1114945..1115154 | + | 210 | - | - | Antitoxin |
| - | 1114958..1115061 | - | 104 | - | - | Toxin |
| D6T76_RS05290 | 1115202..1115546 | - | 345 | WP_169724725.1 | YebY family protein | - |
| D6T76_RS05295 | 1115556..1116425 | - | 870 | WP_169722365.1 | copper homeostasis membrane protein CopD | - |
| D6T76_RS05300 | 1116427..1116798 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| D6T76_RS05305 | 1116936..1117166 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| D6T76_RS05310 | 1117278..1117928 | + | 651 | WP_169722366.1 | carbon-nitrogen hydrolase family protein | - |
| D6T76_RS05315 | 1117953..1118615 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140707 NZ_CP044335:c1115061-1114958 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT140707 NZ_CP044335:1114945-1115154 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
