Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4851661..4851932 | Replicon | chromosome |
| Accession | NZ_CP044314 | ||
| Organism | Escherichia coli strain RM9245 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4851699..4851802 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4851661..4851932 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7D03_RS24190 | 4848818..4850257 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F7D03_RS24195 | 4850375..4850611 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F7D03_RS24200 | 4850716..4850907 | + | 192 | WP_001296140.1 | YebW family protein | - |
| F7D03_RS24205 | 4850908..4851564 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4851661..4851932 | + | 272 | - | - | Antitoxin |
| - | 4851699..4851802 | - | 104 | - | - | Toxin |
| F7D03_RS24210 | 4851960..4852301 | - | 342 | WP_000976492.1 | YebY family protein | - |
| F7D03_RS24215 | 4852314..4853186 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| F7D03_RS24220 | 4853190..4853564 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| F7D03_RS24225 | 4853703..4853933 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F7D03_RS24230 | 4854035..4854690 | + | 656 | Protein_4640 | carbon-nitrogen hydrolase family protein | - |
| F7D03_RS24235 | 4854714..4855376 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140648 NZ_CP044314:c4851802-4851699 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140648 NZ_CP044314:4851661-4851932 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
