Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 4084675..4085510 | Replicon | chromosome |
| Accession | NZ_CP044312 | ||
| Organism | Escherichia coli strain RM13745 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | F7D05_RS20050 | Protein ID | WP_050938921.1 |
| Coordinates | 4085133..4085510 (+) | Length | 126 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A0H0IVG5 |
| Locus tag | F7D05_RS20045 | Protein ID | WP_001339471.1 |
| Coordinates | 4084675..4085043 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7D05_RS20015 | 4081511..4081966 | + | 456 | WP_000581504.1 | hypothetical protein | - |
| F7D05_RS20020 | 4082045..4082278 | + | 234 | WP_001119729.1 | DUF905 family protein | - |
| F7D05_RS20025 | 4082378..4083196 | + | 819 | WP_001234620.1 | DUF945 domain-containing protein | - |
| F7D05_RS20030 | 4083251..4083736 | + | 486 | WP_050938918.1 | antirestriction protein | - |
| F7D05_RS20035 | 4083752..4084228 | + | 477 | WP_001186727.1 | RadC family protein | - |
| F7D05_RS20040 | 4084291..4084512 | + | 222 | WP_050938919.1 | DUF987 domain-containing protein | - |
| F7D05_RS20045 | 4084675..4085043 | + | 369 | WP_001339471.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| F7D05_RS20050 | 4085133..4085510 | + | 378 | WP_050938921.1 | TA system toxin CbtA family protein | Toxin |
| F7D05_RS20055 | 4085507..4085995 | + | 489 | WP_000761721.1 | hypothetical protein | - |
| F7D05_RS20060 | 4086007..4086204 | + | 198 | WP_000839281.1 | DUF957 domain-containing protein | - |
| F7D05_RS20065 | 4086301..4086873 | + | 573 | WP_001290246.1 | DUF4942 domain-containing protein | - |
| F7D05_RS20070 | 4087154..4087690 | - | 537 | WP_000942795.1 | GspM family type II secretion system protein YghD | - |
| F7D05_RS20075 | 4087692..4088870 | - | 1179 | WP_000094974.1 | type II secretion system protein GspL | - |
| F7D05_RS20080 | 4088867..4089844 | - | 978 | WP_000633238.1 | type II secretion system minor pseudopilin GspK | - |
| F7D05_RS20085 | 4089847..4090446 | - | 600 | WP_064760790.1 | type II secretion system minor pseudopilin GspJ | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Integrative and Conjugative Element | - | gspM / gspL / gspK / gspJ / gspI / gspH / gspG / gspF / gspE / gspE / gspD / gspC / rfaE | 4040670..4225307 | 184637 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 126 a.a. Molecular weight: 14209.18 Da Isoelectric Point: 7.7761
>T140601 WP_050938921.1 NZ_CP044312:4085133-4085510 [Escherichia coli]
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYTLVRTDQPEF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYQEAKR
MKTLPDTHVREASSCPSPVTIWQTLLSRLLGQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYTLVRTDQPEF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYQEAKR
Download Length: 378 bp
>T140601 NZ_CP059319:c988795-988268 [Rhizorhabdus wittichii]
ATGAGACTTCCGTCCTGGCACGAGGACGCGATCGCAAAAGCGCATGACCGAGCTTCCTTCGACTGCGGTGACAATGATCT
GAACATCTTCTTGCGGCGCTATGCCCGGCAAAGCCATGAGCTGGGCGGGGCCAAGACGTTCCTTGCCGTCGACGACACCG
ACAACAAGACGATTCTCGGTTTCTACAGCATCGCTCCTGGCAGCATGGACCATGCCGACACGCCCGAACTTGCGAGGCGG
GGCCTCGCCAGGCATGAAGTGCCCGGTTTCCGGCTCGCGCGGCTTGCAACCGATATTCGGGTGCAGGGGAACGGGCTTGG
GGGGCAACTTCTTGGCGCCATCGGCCGCAGATGCATTCGCGTCGCGGCAGAAGTCGGCGGGGTGATGCTGATCATCGACG
CCAAGAACGAGCGGGCTGCCGCATGGTATGCCAGCTATGGCGCCATAACACTGCACGACAAACCGCTGACCCTCATATTG
CCTTTTGCGACACTTGAACGTGAATTGAGATCAGCGGGTCAATTGTAG
ATGAGACTTCCGTCCTGGCACGAGGACGCGATCGCAAAAGCGCATGACCGAGCTTCCTTCGACTGCGGTGACAATGATCT
GAACATCTTCTTGCGGCGCTATGCCCGGCAAAGCCATGAGCTGGGCGGGGCCAAGACGTTCCTTGCCGTCGACGACACCG
ACAACAAGACGATTCTCGGTTTCTACAGCATCGCTCCTGGCAGCATGGACCATGCCGACACGCCCGAACTTGCGAGGCGG
GGCCTCGCCAGGCATGAAGTGCCCGGTTTCCGGCTCGCGCGGCTTGCAACCGATATTCGGGTGCAGGGGAACGGGCTTGG
GGGGCAACTTCTTGGCGCCATCGGCCGCAGATGCATTCGCGTCGCGGCAGAAGTCGGCGGGGTGATGCTGATCATCGACG
CCAAGAACGAGCGGGCTGCCGCATGGTATGCCAGCTATGGCGCCATAACACTGCACGACAAACCGCTGACCCTCATATTG
CCTTTTGCGACACTTGAACGTGAATTGAGATCAGCGGGTCAATTGTAG
Antitoxin
Download Length: 123 a.a. Molecular weight: 13517.22 Da Isoelectric Point: 6.4789
>AT140601 WP_001339471.1 NZ_CP044312:4084675-4085043 [Escherichia coli]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCKADTLGSGGYVYLAVYPTPETKK
Download Length: 369 bp
>AT140601 NZ_CP059319:c989037-988792 [Rhizorhabdus wittichii]
ATGAGCCTGCGCATACGACCGGAGCAAAAGGCTTTGCTCGCCCGGGCGGCGGCGCTCAGACATACCGATCTGACGACCTT
TGTCACCGGTTCGGCGCTGCGCGAGGCCGAGAGCGTAATCGAAGAGGCGGAGCGGACCAAGCTGAGCGAACGGGACAGCC
TGCTCGTTCTCGATCTGCTCGAAAATCCCCCTCCGGCGAATGCAAAATTGCGCGCTGCCATCGCCGCGATGCCCAAGCTC
GCATGA
ATGAGCCTGCGCATACGACCGGAGCAAAAGGCTTTGCTCGCCCGGGCGGCGGCGCTCAGACATACCGATCTGACGACCTT
TGTCACCGGTTCGGCGCTGCGCGAGGCCGAGAGCGTAATCGAAGAGGCGGAGCGGACCAAGCTGAGCGAACGGGACAGCC
TGCTCGTTCTCGATCTGCTCGAAAATCCCCCTCCGGCGAATGCAAAATTGCGCGCTGCCATCGCCGCGATGCCCAAGCTC
GCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|