Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1854788..1855059 | Replicon | chromosome |
| Accession | NZ_CP044311 | ||
| Organism | Escherichia coli strain RM13752 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1854826..1854929 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1854788..1855059 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F7D06_RS09210 | 1851945..1853384 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F7D06_RS09215 | 1853502..1853738 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F7D06_RS09220 | 1853843..1854034 | + | 192 | WP_001296140.1 | YebW family protein | - |
| F7D06_RS09225 | 1854035..1854691 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1854788..1855059 | + | 272 | - | - | Antitoxin |
| - | 1854826..1854929 | - | 104 | - | - | Toxin |
| F7D06_RS09230 | 1855087..1855428 | - | 342 | WP_000976492.1 | YebY family protein | - |
| F7D06_RS09235 | 1855441..1856313 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| F7D06_RS09240 | 1856317..1856691 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| F7D06_RS09245 | 1856830..1857060 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F7D06_RS09250 | 1857162..1857818 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| F7D06_RS09255 | 1857842..1858504 | + | 663 | WP_050939619.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140556 NZ_CP044311:c1854929-1854826 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140556 NZ_CP044311:1854788-1855059 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
