Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RelE-RelB |
| Location | 1851583..1852142 | Replicon | chromosome |
| Accession | NZ_CP044207 | ||
| Organism | Vibrio vulnificus strain Vv180806 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | F6X00_RS24540 | Protein ID | WP_061057688.1 |
| Coordinates | 1851864..1852142 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | A0A3Q0L0M2 |
| Locus tag | F6X00_RS24535 | Protein ID | WP_011082348.1 |
| Coordinates | 1851583..1851867 (+) | Length | 95 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F6X00_RS24495 | 1846900..1847055 | + | 156 | WP_080960526.1 | L-threonine 3-dehydrogenase | - |
| F6X00_RS24500 | 1847126..1847554 | - | 429 | WP_182291727.1 | hypothetical protein | - |
| F6X00_RS24505 | 1847649..1848059 | - | 411 | WP_182291432.1 | hypothetical protein | - |
| F6X00_RS24510 | 1848511..1849188 | - | 678 | WP_139784555.1 | hypothetical protein | - |
| F6X00_RS24515 | 1849194..1849835 | - | 642 | WP_080537026.1 | hypothetical protein | - |
| F6X00_RS24520 | 1849960..1850052 | - | 93 | WP_182291433.1 | DUF3265 domain-containing protein | - |
| F6X00_RS24525 | 1850049..1850300 | - | 252 | WP_103185406.1 | hypothetical protein | - |
| F6X00_RS24530 | 1850540..1851349 | - | 810 | WP_108678046.1 | SUMF1/EgtB/PvdO family nonheme iron enzyme | - |
| F6X00_RS24535 | 1851583..1851867 | + | 285 | WP_011082348.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| F6X00_RS24540 | 1851864..1852142 | + | 279 | WP_061057688.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
| F6X00_RS24545 | 1852171..1852290 | - | 120 | WP_182291728.1 | DUF3265 domain-containing protein | - |
| F6X00_RS24550 | 1852287..1853114 | - | 828 | WP_182291434.1 | HNH endonuclease | - |
| F6X00_RS24555 | 1853104..1854606 | - | 1503 | WP_182291435.1 | AAA family ATPase | - |
| F6X00_RS24560 | 1854626..1854724 | - | 99 | WP_182291436.1 | DUF3265 domain-containing protein | - |
| F6X00_RS24565 | 1854753..1855208 | - | 456 | WP_031856903.1 | hypothetical protein | - |
| F6X00_RS24570 | 1855831..1856346 | - | 516 | WP_182291437.1 | lipocalin family protein | - |
| F6X00_RS24575 | 1856462..1857085 | - | 624 | WP_045596970.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1800451..1854606 | 54155 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10878.57 Da Isoelectric Point: 4.2397
>T140454 WP_061057688.1 NZ_CP044207:1851864-1852142 [Vibrio vulnificus]
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDSILGRLLIIPEISMVISYWVEGDIIRVM
RVLHQKQKFPTD
MILWEEESLNDREKIFEFLYDFNPDAAEKTDNLIEAKVENLLEQPLMGVQRDSILGRLLIIPEISMVISYWVEGDIIRVM
RVLHQKQKFPTD
Download Length: 279 bp
>T140454 NZ_CP059279:c4477384-4477070 [Escherichia coli]
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCTTCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTCGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCCGTTCATCGTACTAAGGGGAAAAAATGA
ATGCACCTGATAACTCAAAAAGCATTGAAAGATGCTGCGGAAAAATACCCGCAACATAAAACGGAGTTGGTGGCTCTGGG
GAACACGATTGCTAAGGGATATTTCAAAAAACCTGAGTCATTAAAAGCAGTATTCCCTTCTCTGGATAACTTCAAATATC
TGGATAAGCATTATGTTTTCAATGTCGGGGGCAATGAATTACGTGTTGTAGCAATGGTCTTTTTTGAATCGCAAAAGTGC
TACATACGTGAAGTTATGACGCATAAAGAATACGATTTCTTTACCGCCGTTCATCGTACTAAGGGGAAAAAATGA
Antitoxin
Download Length: 95 a.a. Molecular weight: 11083.43 Da Isoelectric Point: 9.2167
>AT140454 WP_011082348.1 NZ_CP044207:1851583-1851867 [Vibrio vulnificus]
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFIEHQTAKSR
MEERKARIRNRGKQ
MDTRIQFRVDEETKRLAQQMAESQGRTLSDACRELTEQLAEQQRKTLSHDAWLTEQVNLAFEKFDSGKSVFIEHQTAKSR
MEERKARIRNRGKQ
Download Length: 285 bp
>AT140454 NZ_CP059279:c4477073-4476657 [Escherichia coli]
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTACTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGTGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTTCCGGAAATAGGCAGTAAATCGATGGT
GTCACGCGTTTTGAGCGGGAAAAGGAAATTAACGCTGGAACACGCTAAAAAACTGGCAACGCGATTCGGTATTTCTCCCG
CCTTGTTTATTGATTAA
ATGATTGCGATTGCCGACATCTTGCAAGCAGGAGAAAAGCTAACTGCTGTGGCACCTTTTCTGGCGGGTATTCAGAACGA
GGAACAATACACCCAGGCGCTGGAACTGGTAGATCATCTGCTGCTCAACGATCCTGAAAACCCCTTACTGGATCTGGTGT
GTGCCAAAATAACCGCGTGGGAAGAATCAGCGCCCGAATTTGTGGAATTTAATGCCATGGCTCAAGCCATGCCTGGCGGT
ATAGCCGTGATTCGTACCCTTATGGATCAATATGGTTTAACCCTTTCCGATCTTCCGGAAATAGGCAGTAAATCGATGGT
GTCACGCGTTTTGAGCGGGAAAAGGAAATTAACGCTGGAACACGCTAAAAAACTGGCAACGCGATTCGGTATTTCTCCCG
CCTTGTTTATTGATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|