Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 138084..138318 | Replicon | chromosome |
| Accession | NZ_CP044151 | ||
| Organism | Shigella sonnei strain AR-0426 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 138214..138317 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 138084..138318 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V38_RS00790 | 134639..135301 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| F4V38_RS00795 | 135325..135981 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| F4V38_RS00800 | 136083..136313 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F4V38_RS00805 | 136452..136826 | + | 375 | WP_000168735.1 | CopC domain-containing protein YobA | - |
| F4V38_RS00810 | 136830..137702 | + | 873 | WP_000879296.1 | copper homeostasis membrane protein CopD | - |
| F4V38_RS00815 | 137715..138056 | + | 342 | WP_151089707.1 | YebY family protein | - |
| - | 138084..138318 | - | 235 | - | - | Antitoxin |
| - | 138214..138317 | + | 104 | - | - | Toxin |
| F4V38_RS00820 | 138449..139525 | - | 1077 | WP_001189101.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| F4V38_RS00840 | 141621..141737 | - | 117 | Protein_154 | host-nuclease inhibitor Gam family protein | - |
| F4V38_RS00845 | 141715..142035 | - | 321 | WP_241556168.1 | exodeoxyribonuclease VIII | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | ipaH9.8 | 130674..166785 | 36111 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140319 NZ_CP044151:138214-138317 [Shigella sonnei]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 235 bp
>AT140319 NZ_CP044151:c138318-138084 [Shigella sonnei]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGATAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAAT
AAAAAGCGCGGTGGTCATCAGCTTAAATGATAAAAACCGCCCGTTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
