Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 629827..630098 | Replicon | chromosome |
| Accession | NZ_CP044148 | ||
| Organism | Escherichia coli O157 strain AR-0427 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 629865..629968 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 629827..630098 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V39_RS03205 | 626984..628423 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F4V39_RS03210 | 628541..628777 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F4V39_RS03215 | 628882..629073 | + | 192 | WP_001296140.1 | YebW family protein | - |
| F4V39_RS03220 | 629074..629730 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 629827..630098 | + | 272 | - | - | Antitoxin |
| - | 629865..629968 | - | 104 | - | - | Toxin |
| F4V39_RS03225 | 630126..630467 | - | 342 | WP_000976483.1 | YebY family protein | - |
| F4V39_RS03230 | 630480..631352 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| F4V39_RS03235 | 631356..631730 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| F4V39_RS03240 | 631869..632099 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F4V39_RS03245 | 632201..632857 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| F4V39_RS03250 | 632881..633543 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140278 NZ_CP044148:c629968-629865 [Escherichia coli O157]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140278 NZ_CP044148:629827-630098 [Escherichia coli O157]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
