Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4717571..4717842 | Replicon | chromosome |
| Accession | NZ_CP044143 | ||
| Organism | Escherichia coli O157 strain AR-0429 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4717701..4717804 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4717571..4717842 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V41_RS24530 | 4714126..4714788 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| F4V41_RS24535 | 4714812..4715468 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| F4V41_RS24540 | 4715570..4715800 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F4V41_RS24545 | 4715939..4716313 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| F4V41_RS24550 | 4716317..4717189 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| F4V41_RS24555 | 4717202..4717543 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 4717571..4717842 | - | 272 | - | - | Antitoxin |
| - | 4717701..4717804 | + | 104 | - | - | Toxin |
| F4V41_RS24560 | 4717939..4718595 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| F4V41_RS24565 | 4718596..4718787 | - | 192 | WP_001296140.1 | YebW family protein | - |
| F4V41_RS24570 | 4718892..4719128 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F4V41_RS24575 | 4719246..4720685 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140226 NZ_CP044143:4717701-4717804 [Escherichia coli O157]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140226 NZ_CP044143:c4717842-4717571 [Escherichia coli O157]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
