Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4146502..4146773 | Replicon | chromosome |
| Accession | NZ_CP044140 | ||
| Organism | Escherichia coli O157 strain AR-0430 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4146632..4146735 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4146502..4146773 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V42_RS21730 | 4143057..4143719 | - | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
| F4V42_RS21735 | 4143743..4144399 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| F4V42_RS21740 | 4144501..4144731 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F4V42_RS21745 | 4144870..4145244 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| F4V42_RS21750 | 4145248..4146120 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| F4V42_RS21755 | 4146133..4146474 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 4146502..4146773 | - | 272 | - | - | Antitoxin |
| - | 4146632..4146735 | + | 104 | - | - | Toxin |
| F4V42_RS21760 | 4146870..4147526 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| F4V42_RS21765 | 4147527..4147718 | - | 192 | WP_001296140.1 | YebW family protein | - |
| F4V42_RS21770 | 4147823..4148059 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F4V42_RS21775 | 4148177..4149616 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140190 NZ_CP044140:4146632-4146735 [Escherichia coli O157]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT140190 NZ_CP044140:c4146773-4146502 [Escherichia coli O157]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
