Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/ParE-RHH |
| Location | 1045439..1045973 | Replicon | chromosome |
| Accession | NZ_CP044122 | ||
| Organism | Agrobacterium rhizogenes strain LBA9402 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | B9JDM3 |
| Locus tag | F3X89_RS05210 | Protein ID | WP_007692021.1 |
| Coordinates | 1045674..1045973 (+) | Length | 100 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | B9JDM2 |
| Locus tag | F3X89_RS05205 | Protein ID | WP_007692023.1 |
| Coordinates | 1045439..1045684 (+) | Length | 82 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3X89_RS05185 | 1040612..1041232 | - | 621 | WP_012651243.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| F3X89_RS05190 | 1041262..1042551 | - | 1290 | WP_007692030.1 | dihydroorotase | - |
| F3X89_RS05195 | 1042548..1043504 | - | 957 | WP_007692028.1 | aspartate carbamoyltransferase catalytic subunit | - |
| F3X89_RS05200 | 1043687..1045345 | + | 1659 | WP_007692026.1 | acyl-CoA dehydrogenase family protein | - |
| F3X89_RS05205 | 1045439..1045684 | + | 246 | WP_007692023.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin |
| F3X89_RS05210 | 1045674..1045973 | + | 300 | WP_007692021.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| F3X89_RS05215 | 1046038..1046655 | + | 618 | WP_007692019.1 | GNAT family N-acetyltransferase | - |
| F3X89_RS05220 | 1046759..1047418 | + | 660 | WP_012651244.1 | TetR/AcrR family transcriptional regulator | - |
| F3X89_RS05225 | 1047409..1047651 | - | 243 | WP_037220611.1 | hypothetical protein | - |
| F3X89_RS05230 | 1047718..1048050 | + | 333 | WP_007692017.1 | hypothetical protein | - |
| F3X89_RS05235 | 1047987..1048481 | - | 495 | WP_007692016.1 | Holliday junction resolvase RuvX | - |
| F3X89_RS05240 | 1048598..1049308 | + | 711 | WP_007692015.1 | metal-dependent hydrolase | - |
| F3X89_RS05245 | 1049376..1049663 | + | 288 | WP_007692014.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 100 a.a. Molecular weight: 11335.87 Da Isoelectric Point: 6.4816
>T140133 WP_007692021.1 NZ_CP044122:1045674-1045973 [Agrobacterium rhizogenes]
MASKSGRYVLSPLAEADLEEIWRYTAENWSVKQAETYHAGILDAFEGLASGLKVGRYADIREGYFKYVVGSHVIYYRQQD
TEIAVIRILHQRMDVGLHL
MASKSGRYVLSPLAEADLEEIWRYTAENWSVKQAETYHAGILDAFEGLASGLKVGRYADIREGYFKYVVGSHVIYYRQQD
TEIAVIRILHQRMDVGLHL
Download Length: 300 bp
>T140133 NZ_CP058958:2448192-2448650 [Providencia rettgeri]
ATGATTTTATATCGATTGGTTAAATCCAATTTTGCGCATGATGCATGGTCGGGCCAAGGAGCTATGCTCTACGGCGGGCG
TTGGAATCATAAAGGGACTCCTGCTGTTTATACTTCAACGAGTATTTCATTAGCGACCCTTGAAGTACTCGTTCACATCA
ATCAAGACAGACTATTGAGCCAGTTCAGCTTACTATCCATAGATATCAATGATAAGTACGTGATGAAATTGTCGTTAGAT
CACCTTCCGACAGATTGGCAACAAGACCCCGCACCAACCTCCACCATGGATATTGGCACTATATGGCTTAATAACCAAGA
TAGTCTAGCATTATTAATTCCCTCTTGTATTGTTCCCTATGAATACAACGCAATTATTAACCCGTTACATCCGCAATTTC
AAAAAGCTTTACATACCGTTAAACCACTAGATTTTAGTGTTGACCCGCGCTTAGCATAA
ATGATTTTATATCGATTGGTTAAATCCAATTTTGCGCATGATGCATGGTCGGGCCAAGGAGCTATGCTCTACGGCGGGCG
TTGGAATCATAAAGGGACTCCTGCTGTTTATACTTCAACGAGTATTTCATTAGCGACCCTTGAAGTACTCGTTCACATCA
ATCAAGACAGACTATTGAGCCAGTTCAGCTTACTATCCATAGATATCAATGATAAGTACGTGATGAAATTGTCGTTAGAT
CACCTTCCGACAGATTGGCAACAAGACCCCGCACCAACCTCCACCATGGATATTGGCACTATATGGCTTAATAACCAAGA
TAGTCTAGCATTATTAATTCCCTCTTGTATTGTTCCCTATGAATACAACGCAATTATTAACCCGTTACATCCGCAATTTC
AAAAAGCTTTACATACCGTTAAACCACTAGATTTTAGTGTTGACCCGCGCTTAGCATAA
Antitoxin
Download Length: 82 a.a. Molecular weight: 8768.84 Da Isoelectric Point: 7.2019
>AT140133 WP_007692023.1 NZ_CP044122:1045439-1045684 [Agrobacterium rhizogenes]
MARNTSVSLGDHFNTFIDAQVQTGRYGSASDVVRAGLRLLEEHEAKVKALQGALIAGEESGKPTPFDNAAFLKRMRATYG
E
MARNTSVSLGDHFNTFIDAQVQTGRYGSASDVVRAGLRLLEEHEAKVKALQGALIAGEESGKPTPFDNAAFLKRMRATYG
E
Download Length: 246 bp
>AT140133 NZ_CP058958:2447734-2448195 [Providencia rettgeri]
ATGAGAAACTATATCCCCACAACCCCACTTCAACCGACTGCTTCATCCTTTAAACCACTGTGGCGCCATGTAGGGTTACC
CGCAGAACGTGGTATTGAGTTAACTCATTTCTTGCGTCAAGGCCTATCTGTCTCTGTCTTAGACAATATCCAAGAATGGT
CAGGAATGAGCAAAACTGAATTATTGCGAATATCCGGCATTAATGAGCGCAATATTGCTCGACGTAAAAATGCTGGCCAG
CCCCTTAATGCTGATGAAAGTGAGAGAATTGCTCGTCTAGTGCGGGTATTCGATGCTGCGGTGCGTTTATTTAATGGAGA
TAAGCACGCGGCAAGTGATTGGCTTAACCACCCAGTTAAAGGGTTAGGACATTTACGCCCTATTGAGCTTATTGCGACAG
AAAGCGGAGCCATTGAAGTGATTGATTTGATTGGCCGTATTGAACATGGCGTATTCTCATGA
ATGAGAAACTATATCCCCACAACCCCACTTCAACCGACTGCTTCATCCTTTAAACCACTGTGGCGCCATGTAGGGTTACC
CGCAGAACGTGGTATTGAGTTAACTCATTTCTTGCGTCAAGGCCTATCTGTCTCTGTCTTAGACAATATCCAAGAATGGT
CAGGAATGAGCAAAACTGAATTATTGCGAATATCCGGCATTAATGAGCGCAATATTGCTCGACGTAAAAATGCTGGCCAG
CCCCTTAATGCTGATGAAAGTGAGAGAATTGCTCGTCTAGTGCGGGTATTCGATGCTGCGGTGCGTTTATTTAATGGAGA
TAAGCACGCGGCAAGTGATTGGCTTAACCACCCAGTTAAAGGGTTAGGACATTTACGCCCTATTGAGCTTATTGCGACAG
AAAGCGGAGCCATTGAAGTGATTGATTTGATTGGCCGTATTGAACATGGCGTATTCTCATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|