Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2310848..2311014 | Replicon | chromosome |
| Accession | NZ_CP044121 | ||
| Organism | Raoultella planticola strain S25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2310853..2310956 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2310848..2311014 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3X94_RS11400 | 2306436..2307869 | + | 1434 | WP_150341276.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F3X94_RS11405 | 2307984..2308223 | + | 240 | WP_004863958.1 | YebV family protein | - |
| F3X94_RS11410 | 2308317..2308508 | + | 192 | WP_032686984.1 | YebW family protein | - |
| F3X94_RS11415 | 2308514..2309158 | - | 645 | WP_128319464.1 | protein-serine/threonine phosphatase | - |
| F3X94_RS11420 | 2309301..2310272 | + | 972 | WP_180889110.1 | VirK/YbjX family protein | - |
| F3X94_RS11425 | 2310390..2310533 | + | 144 | WP_142131748.1 | Ecr family regulatory small membrane protein | - |
| - | 2310848..2311014 | + | 167 | - | - | Antitoxin |
| - | 2310853..2310956 | - | 104 | - | - | Toxin |
| F3X94_RS11430 | 2311113..2311451 | - | 339 | WP_032686940.1 | YebY family protein | - |
| F3X94_RS11435 | 2311468..2312337 | - | 870 | WP_032695278.1 | copper homeostasis membrane protein CopD | - |
| F3X94_RS11440 | 2312341..2312715 | - | 375 | WP_032695279.1 | CopC domain-containing protein YobA | - |
| F3X94_RS11445 | 2312842..2313072 | + | 231 | WP_004863978.1 | DNA polymerase III subunit theta | - |
| F3X94_RS11450 | 2313151..2313810 | + | 660 | WP_032686937.1 | exodeoxyribonuclease X | - |
| F3X94_RS11455 | 2313816..2315876 | - | 2061 | WP_064356915.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140123 NZ_CP044121:c2310956-2310853 [Raoultella planticola]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 167 bp
>AT140123 NZ_CP044121:2310848-2311014 [Raoultella planticola]
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
CAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGCGTCAGGTTTTCCAGTCCGCAACAAAAGTGGT
CGAATAA
