Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3088543..3088752 | Replicon | chromosome |
| Accession | NZ_CP044107 | ||
| Organism | Enterobacter hormaechei strain FDAARGOS_642 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3088636..3088739 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3088543..3088752 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB50_RS14680 | 3085080..3085742 | - | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
| FOB50_RS14685 | 3085767..3086417 | - | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| FOB50_RS14690 | 3086529..3086759 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FOB50_RS14695 | 3086897..3087268 | + | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| FOB50_RS14700 | 3087270..3088139 | + | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| FOB50_RS14705 | 3088156..3088494 | + | 339 | WP_033486805.1 | YebY family protein | - |
| - | 3088543..3088752 | - | 210 | - | - | Antitoxin |
| FOB50_RS14710 | 3088620..3088817 | - | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 3088636..3088739 | + | 104 | - | - | Toxin |
| FOB50_RS14715 | 3088863..3089843 | - | 981 | WP_039270562.1 | VirK/YbjX family protein | - |
| FOB50_RS14720 | 3090011..3090655 | + | 645 | WP_033486807.1 | protein-serine/threonine phosphatase | - |
| FOB50_RS14725 | 3090690..3090929 | - | 240 | WP_003859885.1 | YebV family protein | - |
| FOB50_RS14730 | 3091036..3092499 | - | 1464 | WP_017693253.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140109 NZ_CP044107:3088636-3088739 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT140109 NZ_CP044107:c3088752-3088543 [Enterobacter hormaechei]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
