Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2997354..2997494 | Replicon | chromosome |
| Accession | NZ_CP044101 | ||
| Organism | Citrobacter werkmanii strain FDAARGOS_616 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2997356..2997459 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2997354..2997494 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB24_RS15100 | 2992985..2994406 | + | 1422 | WP_150345112.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FOB24_RS15105 | 2994507..2994743 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| FOB24_RS15110 | 2994846..2995037 | + | 192 | WP_032939629.1 | YebW family protein | - |
| FOB24_RS15115 | 2995038..2995679 | - | 642 | WP_087856062.1 | protein-serine/threonine phosphatase | - |
| FOB24_RS15120 | 2995753..2997033 | - | 1281 | WP_085048049.1 | hypothetical protein | - |
| - | 2997354..2997494 | + | 141 | - | - | Antitoxin |
| - | 2997356..2997459 | - | 104 | - | - | Toxin |
| FOB24_RS15125 | 2997615..2997953 | - | 339 | WP_038641391.1 | YebY family protein | - |
| FOB24_RS15130 | 2997974..2998846 | - | 873 | WP_069324700.1 | copper homeostasis membrane protein CopD | - |
| FOB24_RS15135 | 2998850..2999224 | - | 375 | WP_038641395.1 | CopC domain-containing protein YobA | - |
| FOB24_RS15140 | 2999368..2999598 | + | 231 | WP_038641397.1 | DNA polymerase III subunit theta | - |
| FOB24_RS15145 | 2999705..3000361 | + | 657 | WP_150345113.1 | carbon-nitrogen hydrolase family protein | - |
| FOB24_RS15150 | 3000384..3001046 | + | 663 | WP_150345114.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140076 NZ_CP044101:c2997459-2997356 [Citrobacter werkmanii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT140076 NZ_CP044101:2997354-2997494 [Citrobacter werkmanii]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
