Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4506546..4506689 | Replicon | chromosome |
| Accession | NZ_CP044098 | ||
| Organism | Citrobacter portucalensis strain FDAARGOS_617 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4506581..4506684 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4506546..4506689 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB25_RS21565 | 4502993..4503655 | - | 663 | WP_032943776.1 | exodeoxyribonuclease X | - |
| FOB25_RS21570 | 4503679..4504335 | - | 657 | WP_008785043.1 | carbon-nitrogen hydrolase family protein | - |
| FOB25_RS21575 | 4504442..4504672 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| FOB25_RS21580 | 4504816..4505190 | + | 375 | WP_032943775.1 | CopC domain-containing protein YobA | - |
| FOB25_RS21585 | 4505194..4506066 | + | 873 | WP_032943772.1 | copper homeostasis membrane protein CopD | - |
| FOB25_RS21590 | 4506087..4506425 | + | 339 | WP_032943770.1 | YebY family protein | - |
| - | 4506546..4506689 | - | 144 | - | - | Antitoxin |
| - | 4506581..4506684 | + | 104 | - | - | Toxin |
| FOB25_RS21595 | 4506838..4507479 | + | 642 | WP_032943768.1 | protein-serine/threonine phosphatase | - |
| FOB25_RS21600 | 4507480..4507671 | - | 192 | WP_003034941.1 | YebW family protein | - |
| FOB25_RS21605 | 4507774..4508010 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| FOB25_RS21610 | 4508111..4509556 | - | 1446 | WP_122973805.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T140060 NZ_CP044098:4506581-4506684 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT140060 NZ_CP044098:c4506689-4506546 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
