Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1547700..1547794 Replicon chromosome
Accession NZ_CP044064
Organism Yersinia pseudotuberculosis strain FDAARGOS_665

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1547700..1547793 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1547700..1547794 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FOB73_RS06980 1543274..1544224 + 951 WP_011192157.1 prolyl aminopeptidase -
FOB73_RS06985 1544284..1544514 - 231 WP_002211091.1 DNA polymerase III subunit theta -
FOB73_RS06990 1544915..1545424 + 510 WP_002211092.1 non-heme ferritin -
FOB73_RS06995 1545819..1546205 + 387 WP_002211093.1 CopC domain-containing protein YobA -
FOB73_RS07000 1546208..1547092 + 885 WP_038399959.1 copper homeostasis membrane protein CopD -
FOB73_RS07005 1547189..1547530 + 342 WP_002211095.1 YebY family protein -
- 1547700..1547793 + 94 - - Toxin
- 1547700..1547794 - 95 - - Antitoxin
FOB73_RS07015 1548053..1548379 - 327 WP_011192279.1 DUF1493 family protein -
FOB73_RS07020 1548373..1548837 - 465 WP_011192280.1 hypothetical protein -
FOB73_RS07025 1549245..1550405 + 1161 WP_002211099.1 flagellar type III secretion system protein FlhB -
FOB73_RS07030 1550405..1552483 + 2079 WP_012413652.1 flagellar biosynthesis protein FlhA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 94 bp

>T139970 NZ_CP044064:1547700-1547793 [Yersinia pseudotuberculosis]
TAAGCCTACATTAATACCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATCAGGAATCGTA
TTCGGTCTTTTTTT

Antitoxin


Download         Length: 95 bp

>AT139970 NZ_CP044064:c1547794-1547700 [Yersinia pseudotuberculosis]
TAAAAAAAGACCGAATACGATTCCTGATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGT
ATTAATGTAGGCTTA

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References