Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 558539..558684 | Replicon | chromosome |
| Accession | NZ_CP044039 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_630 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 558575..558677 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 558539..558684 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB38_RS05000 | 553669..555729 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FOB38_RS05005 | 555733..556392 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FOB38_RS05010 | 556471..556701 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FOB38_RS05015 | 556814..557188 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| FOB38_RS05020 | 557192..558061 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| FOB38_RS05025 | 558078..558416 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 558539..558684 | - | 146 | - | - | Antitoxin |
| - | 558575..558677 | + | 103 | - | - | Toxin |
| FOB38_RS05035 | 559053..559196 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| FOB38_RS05040 | 559301..560269 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| FOB38_RS05045 | 560426..561079 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| FOB38_RS05050 | 561076..561267 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FOB38_RS05055 | 561365..561604 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FOB38_RS05060 | 561720..563153 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T139912 NZ_CP044039:558575-558677 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT139912 NZ_CP044039:c558684-558539 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
