Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3248965..3249105 | Replicon | chromosome |
| Accession | NZ_CP044033 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_631 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3249001..3249103 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3248965..3249105 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB39_RS16155 | 3244095..3246155 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| FOB39_RS16160 | 3246159..3246818 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FOB39_RS16165 | 3246897..3247127 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FOB39_RS16170 | 3247240..3247614 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FOB39_RS16175 | 3247618..3248487 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| FOB39_RS16180 | 3248504..3248842 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3248965..3249105 | - | 141 | - | - | Antitoxin |
| - | 3249001..3249103 | + | 103 | - | - | Toxin |
| FOB39_RS16185 | 3249181..3250266 | - | 1086 | WP_150330954.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FOB39_RS16190 | 3250235..3250507 | - | 273 | WP_150330955.1 | excisionase | - |
| FOB39_RS16195 | 3250623..3250880 | - | 258 | WP_064153511.1 | DNA polymerase III subunit theta | - |
| FOB39_RS16200 | 3251300..3251494 | - | 195 | WP_032425654.1 | TraR/DksA family transcriptional regulator | - |
| FOB39_RS16205 | 3251491..3251763 | - | 273 | WP_049001955.1 | DUF5405 family protein | - |
| FOB39_RS16215 | 3252070..3252552 | - | 483 | WP_049001950.1 | siphovirus Gp157 family protein | - |
| FOB39_RS16220 | 3252545..3253456 | - | 912 | WP_150330956.1 | recombinase RecT | - |
| FOB39_RS16225 | 3253453..3253761 | - | 309 | WP_150330957.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3244128..3302550 | 58422 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T139896 NZ_CP044033:3249001-3249103 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT139896 NZ_CP044033:c3249105-3248965 [Klebsiella pneumoniae]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
