139851

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 2864550..2865187 Replicon chromosome
Accession NZ_CP043997
Organism Mycobacterium tuberculosis strain 1-0066P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P0DMV7
Locus tag FPJ49_RS13335 Protein ID WP_003413180.1
Coordinates 2864550..2864945 (-) Length 132 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ44
Locus tag FPJ49_RS13340 Protein ID WP_003413183.1
Coordinates 2864942..2865187 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ49_RS13295 2859954..2861165 + 1212 WP_003900845.1 alpha/beta hydrolase family protein -
FPJ49_RS13300 2861292..2861951 + 660 WP_003902296.1 hypothetical protein -
FPJ49_RS13305 2861948..2862610 + 663 WP_003905878.1 hypothetical protein -
FPJ49_RS13310 2862607..2862884 + 278 Protein_2627 type II toxin-antitoxin system VapB family antitoxin -
FPJ49_RS13315 2862977..2863390 + 414 WP_003413164.1 PIN domain nuclease -
FPJ49_RS13320 2863429..2863686 + 258 WP_003413167.1 ribbon-helix-helix domain-containing protein -
FPJ49_RS13325 2863683..2864060 + 378 WP_003413174.1 type II toxin-antitoxin system VapC family toxin -
FPJ49_RS13330 2864076..2864450 - 375 WP_003413177.1 hypothetical protein -
FPJ49_RS13335 2864550..2864945 - 396 WP_003413180.1 type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20 Toxin
FPJ49_RS13340 2864942..2865187 - 246 WP_003413183.1 type II toxin-antitoxin system antitoxin VapB20 Antitoxin
FPJ49_RS13345 2865598..2866017 - 420 WP_003413190.1 A24 family peptidase -
FPJ49_RS13350 2866029..2866838 - 810 WP_003413193.1 shikimate dehydrogenase -
FPJ49_RS13355 2866835..2868088 - 1254 WP_003413196.1 endolytic transglycosylase MltG -
FPJ49_RS13360 2868081..2868593 - 513 WP_003413197.1 Holliday junction resolvase RuvX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Endonuclease VapC20-like

(1-129)

Antitoxin

Ribbon-helix-helix protein, CopG

(11-49)


Sequences

Toxin        


Download         Length: 132 a.a.        Molecular weight: 14619.53 Da        Isoelectric Point: 6.9794

>T139851 WP_003413180.1 NZ_CP043997:c2864945-2864550 [Mycobacterium tuberculosis]
MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAAAAIRLSTVVRVEHVTADLEE
QAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDFSAAGFVEVRPE

Download         Length: 396 bp

>T139851 NZ_CP058833:c4078690-4078412 [Shigella flexneri]
ATGATTCAAAGGGATATTGAATACTCGGGACAATATTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9098.33 Da        Isoelectric Point: 5.6007

>AT139851 WP_003413183.1 NZ_CP043997:c2865187-2864942 [Mycobacterium tuberculosis]
MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVGSFVGEADLSASVDDVVYGKH
E

Download         Length: 246 bp

>AT139851 NZ_CP058833:c4078953-4078693 [Shigella flexneri]
ATGGCTGCTAACGCGTTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCAGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCATTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 5WZ4
PDB 5WZF

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BW31

References