Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 714723..715372 Replicon chromosome
Accession NZ_CP043996
Organism Mycobacterium tuberculosis strain 1-0072P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P67241
Locus tag FPJ52_RS03245 Protein ID WP_003403236.1
Coordinates 714977..715372 (+) Length 132 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ34
Locus tag FPJ52_RS03240 Protein ID WP_003403235.1
Coordinates 714723..714977 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ52_RS03215 709849..710544 + 696 WP_003900189.1 galactose-1-phosphate uridylyltransferase -
FPJ52_RS03220 710541..711032 + 492 WP_192948149.1 galactose-1-phosphate uridylyltransferase -
FPJ52_RS03225 711029..712120 + 1092 WP_003900977.1 galactokinase -
FPJ52_RS03230 712515..713579 + 1065 WP_003898532.1 hypothetical protein -
FPJ52_RS03235 713683..714630 + 948 WP_003403232.1 DUF732 domain-containing protein -
FPJ52_RS03240 714723..714977 + 255 WP_003403235.1 type II toxin-antitoxin system antitoxin VapB30 Antitoxin
FPJ52_RS03245 714977..715372 + 396 WP_003403236.1 type II toxin-antitoxin system toxin ribonuclease C30 Toxin
FPJ52_RS03250 715466..716206 - 741 WP_003403239.1 TVP38/TMEM64 family protein -
FPJ52_RS03255 716338..716598 + 261 WP_003403244.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
FPJ52_RS03260 716595..717002 + 408 WP_003403246.1 type II toxin-antitoxin system VapC family toxin -
FPJ52_RS03265 717074..718225 - 1152 WP_003403248.1 FIST C-terminal domain-containing protein -
FPJ52_RS03270 718318..720045 - 1728 WP_003901883.1 exodeoxyribonuclease V subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-124)

Antitoxin

Antitoxin VapB-like

(1-83)


Sequences

Toxin        


Download         Length: 132 a.a.        Molecular weight: 14250.04 Da        Isoelectric Point: 4.7475

>T139757 WP_003403236.1 NZ_CP043996:714977-715372 [Mycobacterium tuberculosis]
MVIDTSALVAMLSDEPDAERFEAAVEADHIRLMSTASYLETALVIEARFGEPGGRELDLWLHRAAVDLVAVHADQADAAR
AAYRTYGKGRHRAGLNYGDCFSYGLAKISGQPLLFKGEDFQHTDIATVALP

Download         Length: 396 bp

>T139757 NZ_CP058796:2057274-2057377 [Shigella flexneri]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9139.52 Da        Isoelectric Point: 9.2702

>AT139757 WP_003403235.1 NZ_CP043996:714723-714977 [Mycobacterium tuberculosis]
MALSIKHPEADRLARALAARTGETLTEAVVTALRERLARETGRARVVPLRDELAAIRHRCAALPVVDNRSAEAILGYDER
GLPA

Download         Length: 255 bp

>AT139757 NZ_CP058796:c2057415-2057144 [Shigella flexneri]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4XGR
PDB 4XGQ

Antitoxin

Source ID Structure
PDB 4XGR
PDB 4XGQ
AlphaFold DB A0A7U4BSC2

References