139717

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/-
Location 2012343..2012872 Replicon chromosome
Accession NZ_CP043995
Organism Mycobacterium tuberculosis strain 4-0041P6C4

Toxin (Protein)


Gene name parE Uniprot ID G0TMR4
Locus tag FPJ87_RS09560 Protein ID WP_003411124.1
Coordinates 2012555..2012872 (+) Length 106 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID P9WJ74
Locus tag FPJ87_RS09555 Protein ID WP_003411127.1
Coordinates 2012343..2012558 (+) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ87_RS09525 2007449..2008225 + 777 WP_003411137.1 YggS family pyridoxal phosphate-dependent enzyme -
FPJ87_RS09530 2008291..2008947 + 657 WP_003411133.1 cell division protein SepF -
FPJ87_RS09535 2009109..2009399 + 291 WP_003900476.1 YggT family protein -
FPJ87_RS09540 2009667..2010449 + 783 WP_003411131.1 cell wall synthesis protein Wag31 -
FPJ87_RS09545 2010544..2010900 + 357 WP_003411130.1 hypothetical protein -
FPJ87_RS09550 2011030..2012088 - 1059 WP_003411129.1 hypothetical protein -
FPJ87_RS09555 2012343..2012558 + 216 WP_003411127.1 antitoxin ParD2 Antitoxin
FPJ87_RS09560 2012555..2012872 + 318 WP_003411124.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FPJ87_RS09570 2013285..2014631 + 1347 WP_003411121.1 M20/M25/M40 family metallo-hydrolase -
FPJ87_RS09575 2014679..2015209 + 531 WP_003411119.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
FPJ87_RS09580 2015214..2016287 - 1074 WP_003411116.1 quinone-dependent dihydroorotate dehydrogenase -
FPJ87_RS09585 2016323..2016604 - 282 WP_003411112.1 hypothetical protein -
FPJ87_RS09590 2016601..2017677 - 1077 WP_003411110.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Conserved hypothetical protein CHP02574, addiction module

(11-69)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12312.88 Da        Isoelectric Point: 6.4831

>T139717 WP_003411124.1 NZ_CP043995:2012555-2012872 [Mycobacterium tuberculosis]
MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAI
DILAVRHGMENPNAVEAEISGRTFE

Download         Length: 318 bp

>T139717 NZ_CP058786:c4006041-4005754 [Shigella flexneri]
ATGCCAATGGAGTTTGAATGGGATGAAAACAAGGCCAAAAGTAATCGGGTGAAACATGGCATCCGCTTTGAAGATGCGGT
GTTATTGTTTGATGATCCACAACATTTGTCACAGCAAGAACGCATAGAAAACGGTGAGTATCGCTGGCAGACAATCGGCC
TGGTTTACGGCATCGTGGTTATTCTGGTTGCGCATACCATCCGTTTCGAAAGCGGAAATGAAATTATTCGAATCATCAGT
GCACGAAAAGCAGATCGTAAAGAGAGGAATCGCTATGAGCATGGTTAA

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7880.70 Da        Isoelectric Point: 4.4055

>AT139717 WP_003411127.1 NZ_CP043995:2012343-2012558 [Mycobacterium tuberculosis]
VVVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDDFDKRIRARLG

Download         Length: 216 bp

>AT139717 NZ_CP058786:c4005767-4005465 [Shigella flexneri]
ATGAGCATGGTTAAACATAAACGAGGGACCTCCTCTACACTCGATGTGCAGCATGAGGCCGAACTGAAGGCGCTGGCGAA
TAAATCCGACGAAGATATTGATTACAGTGATATCCCACCTTCCAGCGATGAGCAATGGTCTAACGCCGAACGCGGTAAGT
TTTATCGGCCATTGAAAACTCAGGCTTCGGTGCGTATTGATGCTGATGTGATGGAATGGTTGAAGCGACCAGGTAAAGGC
TATCAAACTCGCCTGAACGCAATTTTACGTGAAGCGATGCTGCGCGATCAGAACAAAAAATAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TMR4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAJ4

References