Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/PIN(toxin) |
Location | 1543342..1543979 | Replicon | chromosome |
Accession | NZ_CP043995 | ||
Organism | Mycobacterium tuberculosis strain 4-0041P6C4 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | P0DMV7 |
Locus tag | FPJ87_RS07370 | Protein ID | WP_003413180.1 |
Coordinates | 1543584..1543979 (+) | Length | 132 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | P9WJ44 |
Locus tag | FPJ87_RS07365 | Protein ID | WP_003413183.1 |
Coordinates | 1543342..1543587 (+) | Length | 82 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FPJ87_RS07345 | 1539936..1540448 | + | 513 | WP_003413197.1 | Holliday junction resolvase RuvX | - |
FPJ87_RS07350 | 1540441..1541694 | + | 1254 | WP_003413196.1 | endolytic transglycosylase MltG | - |
FPJ87_RS07355 | 1541691..1542500 | + | 810 | WP_003413193.1 | shikimate dehydrogenase | - |
FPJ87_RS07360 | 1542512..1542931 | + | 420 | WP_003413190.1 | A24 family peptidase | - |
FPJ87_RS07365 | 1543342..1543587 | + | 246 | WP_003413183.1 | type II toxin-antitoxin system antitoxin VapB20 | Antitoxin |
FPJ87_RS07370 | 1543584..1543979 | + | 396 | WP_003413180.1 | type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20 | Toxin |
FPJ87_RS07375 | 1544079..1544453 | + | 375 | WP_003413177.1 | hypothetical protein | - |
FPJ87_RS07380 | 1544469..1544846 | - | 378 | WP_003413174.1 | type II toxin-antitoxin system VapC family toxin | - |
FPJ87_RS07385 | 1544843..1545100 | - | 258 | WP_003413167.1 | ribbon-helix-helix domain-containing protein | - |
FPJ87_RS07390 | 1545139..1545552 | - | 414 | WP_003413164.1 | PIN domain nuclease | - |
FPJ87_RS07395 | 1545645..1545923 | - | 279 | WP_003901422.1 | type II toxin-antitoxin system VapB family antitoxin | - |
FPJ87_RS07400 | 1545920..1546581 | - | 662 | Protein_1458 | hypothetical protein | - |
FPJ87_RS07405 | 1546578..1547237 | - | 660 | WP_003900846.1 | LppA family lipoprotein | - |
FPJ87_RS07410 | 1547364..1548575 | - | 1212 | WP_003900845.1 | alpha/beta hydrolase family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 132 a.a. Molecular weight: 14619.53 Da Isoelectric Point: 6.9794
>T139712 WP_003413180.1 NZ_CP043995:1543584-1543979 [Mycobacterium tuberculosis]
MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAAAAIRLSTVVRVEHVTADLEE
QAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDFSAAGFVEVRPE
MIFVDTSFWAALGNAGDARHGTAKRLWASKPPVVMTSNHVLGETWTLLNRRCGHRAAVAAAAIRLSTVVRVEHVTADLEE
QAWEWLVRHDEREYSFVDATSFAVMRKKGIQNAYAFDGDFSAAGFVEVRPE
Download Length: 396 bp
>T139712 NZ_CP058786:2648343-2648450 [Shigella flexneri]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGAATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA
Antitoxin
Download Length: 82 a.a. Molecular weight: 9098.33 Da Isoelectric Point: 5.6007
>AT139712 WP_003413183.1 NZ_CP043995:1543342-1543587 [Mycobacterium tuberculosis]
MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVGSFVGEADLSASVDDVVYGKH
E
MLVAYICHVKRLQIYIDEDVDRALAVEARRRRTSKAALIREYVAEHLRQPGPDPVDAFVGSFVGEADLSASVDDVVYGKH
E
Download Length: 246 bp
>AT139712 NZ_CP058786:c2648296-2648230 [Shigella flexneri]
TGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
TGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
PDB | 5WZ4 | |
PDB | 5WZF |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A7U4BW31 |