Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 366582..367225 Replicon chromosome
Accession NZ_CP043995
Organism Mycobacterium tuberculosis strain 4-0041P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P9WFB8
Locus tag FPJ87_RS01600 Protein ID WP_003401566.1
Coordinates 366800..367225 (+) Length 142 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID O07227
Locus tag FPJ87_RS01595 Protein ID WP_003401563.1
Coordinates 366582..366803 (+) Length 74 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ87_RS01570 361710..362513 - 804 WP_003401540.1 hypothetical protein -
FPJ87_RS01575 362523..363920 - 1398 WP_003401544.1 sulfatase -
FPJ87_RS01580 364099..365865 + 1767 WP_014297570.1 PE family protein -
FPJ87_RS01585 366008..366235 + 228 WP_003401555.1 ribbon-helix-helix protein, CopG family -
FPJ87_RS01590 366232..366534 + 303 WP_003401560.1 toxin-antitoxin system toxin -
FPJ87_RS01595 366582..366803 + 222 WP_003401563.1 type II toxin-antitoxin system antitoxin VapB2 Antitoxin
FPJ87_RS01600 366800..367225 + 426 WP_003401566.1 PIN domain nuclease Toxin
FPJ87_RS01605 367361..367993 + 633 WP_003401571.1 TetR/AcrR family transcriptional regulator -
FPJ87_RS01610 367990..368898 + 909 WP_003900117.1 SDR family NAD(P)-dependent oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-125)

Antitoxin

Ribbon-helix-helix protein, CopG

(9-37)


Sequences

Toxin        


Download         Length: 142 a.a.        Molecular weight: 15713.90 Da        Isoelectric Point: 5.6002

>T139688 WP_003401566.1 NZ_CP043995:366800-367225 [Mycobacterium tuberculosis]
VTDQRWLIDKSALVRLTDSPDMEIWSNRIERGLVHITGVTRLEVGFSAECGEIARREFREPPLSAMPVEYLTPRIEDRAL
EVQTLLADRGHHRGPSIPDLLIAATAELSGLTVLHVDKDFDAIAALTGQKTERLTHRPPSA

Download         Length: 426 bp

>T139688 NZ_CP058780:2615817-2615924 [Shigella flexneri]
ATGACGCTCGCGCAGTTTGCCATGACTTTCTGGCACGACCTGGCAGCACCGATCCTGGCGGGGATTATTACCGCAGCGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 74 a.a.        Molecular weight: 8088.31 Da        Isoelectric Point: 10.7177

>AT139688 WP_003401563.1 NZ_CP043995:366582-366803 [Mycobacterium tuberculosis]
MSDVLIRDIPDDVLASLDAIAARLGLSRTEYIRRRLAQDAQTARVTVTAADLRRLRGAVAGLGDPELMRQAWR

Download         Length: 222 bp

>AT139688 NZ_CP058780:c2615770-2615704 [Shigella flexneri]
TGTCTGGTTTCAAGATTAGCCCCCGTTTTGTTGTCAGGTTTTACCTCTCAACGTGCGGGGGTTTTCT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 3H87

Antitoxin

Source ID Structure
PDB 3H87
AlphaFold DB A0A829CG48

References