Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2661109..2661377 | Replicon | chromosome |
| Accession | NZ_CP043950 | ||
| Organism | Escherichia coli strain ST95-32 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2661147..2661249 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2661109..2661377 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F3J96_RS13415 | 2658266..2659705 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F3J96_RS13420 | 2659823..2660059 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| F3J96_RS13425 | 2660164..2660355 | + | 192 | WP_001296140.1 | YebW family protein | - |
| F3J96_RS13430 | 2660356..2661012 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 2661109..2661377 | + | 269 | - | - | Antitoxin |
| - | 2661147..2661249 | - | 103 | - | - | Toxin |
| F3J96_RS13435 | 2661407..2661748 | - | 342 | WP_000984819.1 | YebY family protein | - |
| F3J96_RS13440 | 2661761..2662633 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| F3J96_RS13445 | 2662637..2663011 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| F3J96_RS13450 | 2663150..2663380 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| F3J96_RS13455 | 2663482..2664138 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| F3J96_RS13460 | 2664161..2664823 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T139637 NZ_CP043950:c2661249-2661147 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT139637 NZ_CP043950:2661109-2661377 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
