Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2013644..2013915 | Replicon | chromosome |
| Accession | NZ_CP043937 | ||
| Organism | Escherichia coli strain RM14516 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2013682..2013785 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2013644..2013915 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FS841_RS09670 | 2010801..2012240 | + | 1440 | Protein_1895 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FS841_RS09675 | 2012358..2012594 | + | 237 | WP_001295499.1 | YebV family protein | - |
| FS841_RS09680 | 2012699..2012890 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FS841_RS09685 | 2012891..2013547 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2013644..2013915 | + | 272 | - | - | Antitoxin |
| - | 2013682..2013785 | - | 104 | - | - | Toxin |
| FS841_RS09690 | 2013943..2014284 | - | 342 | WP_000976481.1 | YebY family protein | - |
| FS841_RS09695 | 2014297..2015169 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| FS841_RS09700 | 2015173..2015547 | - | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| FS841_RS09705 | 2015686..2015916 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FS841_RS09710 | 2016018..2016674 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FS841_RS09715 | 2016698..2017360 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2005414..2037701 | 32287 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T139520 NZ_CP043937:c2013785-2013682 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT139520 NZ_CP043937:2013644-2013915 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
