Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 5042316..5042461 | Replicon | chromosome |
| Accession | NZ_CP043932 | ||
| Organism | Klebsiella pneumoniae strain 555 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 5042352..5042454 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 5042316..5042461 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F2X40_RS24805 | 5037446..5039506 | + | 2061 | WP_048978170.1 | oligopeptidase B | - |
| F2X40_RS24810 | 5039510..5040169 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| F2X40_RS24815 | 5040248..5040478 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| F2X40_RS24820 | 5040591..5040965 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| F2X40_RS24825 | 5040969..5041838 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| F2X40_RS24830 | 5041855..5042193 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 5042316..5042461 | - | 146 | - | - | Antitoxin |
| - | 5042352..5042454 | + | 103 | - | - | Toxin |
| F2X40_RS24840 | 5042829..5042972 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| F2X40_RS24845 | 5043077..5044045 | - | 969 | WP_074421963.1 | VirK/YbjX family protein | - |
| F2X40_RS24850 | 5044202..5044855 | + | 654 | WP_065808635.1 | protein-serine/threonine phosphatase | - |
| F2X40_RS24855 | 5044852..5045043 | - | 192 | WP_002911395.1 | YebW family protein | - |
| F2X40_RS24860 | 5045141..5045380 | - | 240 | WP_002911393.1 | YebV family protein | - |
| F2X40_RS24865 | 5045496..5046929 | - | 1434 | WP_065808636.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T139486 NZ_CP043932:5042352-5042454 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT139486 NZ_CP043932:c5042461-5042316 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
